ID | 50826 |
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Name | CQE72 (QTL ACCESSION ) |
Synonyms (1) | CQE72-CBCN |
TO TERM | TO:0000466 (carbon content) |
Trait Name | carbon content |
Trait Symbol | CBCN |
Type | QTL |
Species | Oryza sativa (Oryza sativa) [ GR_tax:013681 ] |
Germplasm | |
Description | Carbon content trait assay is for carbon isotope analysis. Grains were oven- dried at 80C for 2 days, and isotope [13C] values were determined with a mass spectrometer (Finnegan MAT, San Jose, Calif.). Assay is an indicator of intercellular carbon di-oxide concentration. The means of ten replications per line were used in the data analysis. Phenotypic effect contributed by Nipponbare allele. Chromosomal locations of putative QTLs were determined by single-factor analysis (one-way ANOVA) with the general linear model procedure of QGENE. Two- way ANOVAs for epistatic interaction were also carried out with QGENE at Pd0.01 threshold. The tests were done only with marker loci linked to QTLs with a single- factor P of d0.01 to reduce the likelihood of committing a type-I error. |
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | CQE72 |
Chromosome | 8 |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 8 | 26,910,520-28,248,441 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 8 | 112.6-120.4 cM | View Comparative Map | |||
|
Species | Type | Name | Assoc. Type |
---|---|---|---|
Oryza sativa | RFLP | C153 | qtl_marker |
Oryza sativa | RFLP | C20079S | qtl_marker |
Oryza sativa | RFLP | C222 | qtl_marker |
Oryza sativa | RFLP | C50580S | qtl_marker |
Oryza sativa | RFLP | C50778S | qtl_marker |
Oryza sativa | RFLP | C83 | qtl_marker |
Avena sativa | RFLP | CDO99 | qtl_marker |
Oryza sativa | RFLP | C12955 | qtl_marker |
Oryza sativa | RFLP | RG136 | qtl_marker |
Oryza sativa | RFLP | S2314 | qtl_marker |
Oryza sativa | RFLP | R2662 | qtl_marker |
Oryza sativa | RFLP | R1880 | qtl_marker |
Oryza sativa | RFLP | S1570 | qtl_marker |
Oryza sativa | RFLP | R662 | qtl_marker |
Oryza sativa | RFLP | S1088 | qtl_marker |
Oryza sativa | RFLP | E2209S | qtl_marker |
Oryza sativa | RFLP | R10036S | qtl_marker |
Oryza sativa | RFLP | R404 | qtl_marker |
Oryza sativa | RFLP | R1963 | qtl_marker |
Oryza sativa | RFLP | R2027 | qtl_marker |
Oryza sativa | RFLP | G8025 | qtl_marker |
Term Type | Term Name | Term Accession | |
---|---|---|---|
Plant Structure | fruit | PO:0009001 | Search |
Plant Growth and Development Stage | whole plant fruit ripening complete stage | PO:0007038 | Search |
Growth Stage | rice plant growth stage | GRO:0007001 | Search |
Environment | unknown environment | EO:0007403 | Search |
Plant Structure | whole plant | PO:0000003 | Search |
Plant Growth and Development Stage | whole plant development stage | PO:0007033 | Search |
Plant Structure | plant structure | PO:0009011 | Search |
Plant Growth and Development Stage | plant structure development stage | PO:0009012 | Search |
Trait | carbon content | TO:0000466 | Search |
Taxonomy | Oryza sativa | GR_tax:013681 | Search |