ID | 50724 |
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Name | CQE38 (QTL ACCESSION ) |
Synonyms (1) | CQE38-CHLRO |
TO TERM | TO:0000298 (chlorophyll ratio) |
Trait Name | chlorophyll ratio |
Trait Symbol | CHLRO |
Type | QTL |
Species | Oryza sativa (Oryza sativa) [ GR_tax:013681 ] |
Germplasm | |
Description | The ratio of Chl-a to Chl-b (Chl a:b) were analyzed at 5 days after heading. Assay is an indicator of relative amounts of photosystem I or II. The means of ten replications per line were used in the data analysis. Phenotypic effect contributed by Nipponbare allele. Chromosomal locations of putative QTLs were determined by single-factor analysis (one-way ANOVA) with the general linear model procedure of QGENE. Two-way ANOVAs for epistatic interaction were also carried out with QGENE at Pd0.01 threshold. The tests were done only with marker loci linked to QTLs with a single-factor P of d0.01 to reduce the likelihood of committing a type-I error. |
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | CQE38 |
Chromosome | 5 |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 139,187-3,344,572 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 5 | 3-27.7 cM | View Comparative Map | |||
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Term Type | Term Name | Term Accession | |
---|---|---|---|
Plant Structure | flag leaf | PO:0020103 | Search |
Plant Growth and Development Stage | sporophyte vegetative stage | PO:0007134 | Search |
Plant Growth and Development Stage | inflorescence emergence stage | PO:0007041 | Search |
Growth Stage | A-vegetative stage | GRO:0007139 | Search |
Environment | unknown environment | EO:0007403 | Search |
Plant Growth and Development Stage | sporophyte reproductive stage | PO:0007130 | Search |
Plant Structure | vascular leaf | PO:0009025 | Search |
Trait | chlorophyll ratio | TO:0000298 | Search |
Taxonomy | Oryza sativa | GR_tax:013681 | Search |