ID | 50699 |
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Name | CQE30 (QTL ACCESSION ) |
Synonyms (1) | CQE30-SPCULMRO |
TO TERM | TO:0000561 (space to culm ratio) |
Trait Name | space to culm ratio |
Trait Symbol | SPCULMRO |
Type | QTL |
Species | Oryza sativa (Oryza sativa) [ GR_tax:013681 ] |
Germplasm | |
Description | Space to stem ratio is calculated as space/stem=space/stem numbers. Space=1/3 (width/2)2plant height and stem or culm numbers is the total number of culms in a plant, which is equal to total number of tillers. Phenotypic effect contributed by Kasalath allele. The means of ten replications per line were used in the data analysis. Chromosomal locations of putative QTLs were determined by single-factor analysis (one-way ANOVA) with the general linear model procedure of QGENE. Two-way ANOVAs for epistatic interaction were also carried out with QGENE at Pd0.01 threshold. The tests were done only with marker loci linked to QTLs with a single-factor P of d0.01 to reduce the likelihood of committing a type-I error. |
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | CQE30 |
Chromosome | 4 |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 4,433,487-19,544,854 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 4 | 19.6-52.6 cM | View Comparative Map | |||
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Term Type | Term Name | Term Accession | |
---|---|---|---|
Plant Structure | stem | PO:0009047 | Search |
Plant Structure | whole plant | PO:0000003 | Search |
Plant Growth and Development Stage | whole plant fruit ripening complete stage | PO:0007038 | Search |
Growth Stage | A-vegetative stage | GRO:0007139 | Search |
Growth Stage | B-reproductive stage | GRO:0007140 | Search |
Environment | unknown environment | EO:0007403 | Search |
Plant Growth and Development Stage | sporophyte reproductive stage | PO:0007130 | Search |
Plant Growth and Development Stage | sporophyte vegetative stage | PO:0007134 | Search |
Trait | space to culm ratio | TO:0000561 | Search |
Taxonomy | Oryza sativa | GR_tax:013681 | Search |