ID | 50566 |
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Name | CQE1 (QTL ACCESSION ) |
Synonyms (1) | CQE1-CHLCN |
TO TERM | TO:0000495 (chlorophyll content) |
Trait Name | chlorophyll content |
Trait Symbol | CHLCN |
Type | QTL |
Species | Oryza sativa (Oryza sativa) [ GR_tax:013681 ] |
Germplasm | |
Description | Chlorophyll content for decreased levels was analyzed from the differences between leaves at 5 and 25 days after heading. Assay is an indicator of leaf senescence. Phenotypic effect contributed by Kasalath allele. The means of ten replications per line were used in the data analysis. Chromosomal locations of putative QTLs were determined by single-factor analysis (one-way ANOVA) with the general linear model procedure of QGENE. Two-way ANOVAs for epistatic interaction were also carried out with QGENE at Pd0.01 threshold. The tests were done only with marker loci linked to QTLs with a single-factor P of d0.01 to reduce the likelihood of committing a type-I error. |
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | CQE1 |
Chromosome | 1 |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 22,077,133-22,077,613 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 1 | 90.9-90.9 cM | View Comparative Map | |||
|
Species | Type | Name | Assoc. Type |
---|---|---|---|
Avena sativa | RFLP | CDO920 | qtl_marker |
Oryza sativa | RFLP | R1928 | qtl_marker |
Oryza sativa | RFLP | R2159 | qtl_marker |
Oryza sativa | RFLP | E50872S | qtl_marker |
Term Type | Term Name | Term Accession | |
---|---|---|---|
Plant Structure | flag leaf | PO:0020103 | Search |
Plant Growth and Development Stage | inflorescence emergence stage | PO:0007041 | Search |
Growth Stage | A-vegetative stage | GRO:0007139 | Search |
Environment | unknown environment | EO:0007403 | Search |
Plant Growth and Development Stage | sporophyte reproductive stage | PO:0007130 | Search |
Plant Growth and Development Stage | sporophyte vegetative stage | PO:0007134 | Search |
Plant Structure | vascular leaf | PO:0009025 | Search |
Trait | chlorophyll content | TO:0000495 | Search |
Taxonomy | Oryza sativa | GR_tax:013681 | Search |