ID | 4819 | ||||||||
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Name | CDO457 (GRAINGENES PROBE) | ||||||||
Synonyms (7) |
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MAIZEGDB PROBE | p-cdo457 | ||||||||
Type | RFLP | ||||||||
Species | Avena sativa (Oat) [ GR_tax:012534 ] | ||||||||
Germplasm | |||||||||
Description | |||||||||
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | CDO457 |
DNA Treatment | |
Source Type | cDNA |
Source Tissue | etiolated leaf |
Source Treatment | etiolated |
Vector | pBluSK |
Vector Antibiotic Resistance | Ampicillin |
Fragment Size | 1.4 |
Vector Excision Enzyme | EcoRI/XhoI |
Vector Primers | M13 forward/M13 reverse |
Overgo1 | |
Overgo2 |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell Diploid 1995 | BNL6.32 | E | 61.4-61.4 cM | View Comparative Map | |||
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Oat, KxO, 2003 | BNL6.32 | 7_10_28 | 158-158 cM | View Comparative Map | ||||
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BNL6.32 | 24_26_34 | 41.5-41.5 cM | View Comparative Map | |||||
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QTL | Cornell Kan/Ogl QTL 1995 | BNL6.32 | 28 | 35.5-35.5 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Barley consensus - 1995 | BNL6.32 | 5H | 115.3-115.3 cM | View Comparative Map | |||
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Barley consensus 2 - 1996 | BNL6.32 | 5H | 166.6-166.6 cM | View Comparative Map | ||||
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QTL | NCSL Zhed/ND//Fos QTL 2003 | BNL6.32 | 5H | 157.5-157.5 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Composite 2004 | BNL6.32 | 5A | 87-87 cM | View Comparative Map | |||
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Cornell Synthetic/Opata 1995 | BNL6.32 | 5A | 115.7-115.7 cM | View Comparative Map | ||||
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QTL | Synthetic/Opata RI RFLP/SSR QTL 1995 | BNL6.32 | 5A | 115.7-115.7 cM | View Comparative Map | |||
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Wheat composite QTL 2004 | BNL6.32 | 5A | 87-87 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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QTL | UCD Lab/Bla QTL 1998 | BNL6.32 | 3 | 3-3 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell RFLP 1994 | BNL6.32 | 3 | 121.9-121.9 cM | View Comparative Map | |||
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Cornell RFLP 2001 | BNL6.32 | 3 | 129.8-129.8 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | BNL 1996 | BNL6.32 | 1 | 255.2-255.2 cM | View Comparative Map | |||
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Cornell Wilson 1999 | BNL6.32 | 5 | 11.1-11.1 cM | View Comparative Map | ||||
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UMC 1998 | BNL6.32 | 1 | 241.3-241.3 cM | View Comparative Map | ||||
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BNL6.32 | 5 | 5.1-5.1 cM | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Klein 2004 | BNL6.32 | LG-01 | 13.2-13.2 cM | View Comparative Map | |||
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Mace 2009 | BNL6.32 | 1 | 6.5-6.5 cM | View Comparative Map | ||||
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QTL | UGA BTx623/IS3620C RL SSR RFLP QTL 2006 | BNL6.32 | 1 | 9.4-9.4 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 34,549,443-34,549,691 bp | View Comparative Map | |||
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BNL6.32 | Chr. 3 | 34,549,507-34,549,671 bp | View Comparative Map | |||||
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Species | Type | Name | Assoc. Type |
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Triticum aestivum | Breakpoint Interval | 5AL23-0.87-1.00 | Wheat-EST-BI |
Triticum aestivum | Breakpoint Interval | 5BL9-0.76-0.79 | Wheat-EST-BI |
Avena sativa | QTL | AQDF223 | qtl_marker |
Avena sativa | QTL | AQDF224 | qtl_marker |
Avena sativa | QTL | AQDF225 | qtl_marker |
Avena sativa | QTL | AQDF227 | qtl_marker |
Avena sativa | QTL | AQDF228 | qtl_marker |
Oryza sativa | QTL | AQEO008 | qtl_marker |
Oryza sativa | QTL | AQEP013 | qtl_marker |
Hordeum vulgare | QTL | AQFM015 | qtl_marker |
Sorghum bicolor | QTL | AQGN002 | qtl_marker |
Sorghum bicolor | QTL | AQHL035 | qtl_marker |
Zea mays subsp. mays | Maize Bin | Bin 1.11 | bin_marker |
Zea mays subsp. mays | Maize Bin | Bin 5.00 | bin_marker |
Avena sativa | Probed Site | cdo457a | maizegdb_to_gramene |
Avena sativa | Probed Site | cdo457b | maizegdb_to_gramene |
Avena sativa | EST | AA231915 | related_sequence |
Avena sativa | EST | BE439076 | related_sequence |
Avena sativa | EST | BE439142 | related_sequence |
CDO457 BROWS Autorad: Survey blot of the probe CDO457 for the comparative barley/rice/oat/wheat/sugarcane project | |
CDO457 SL Autorad: Survey blot of the probe CDO457 for the BS125/2/BS125/WLO2 population |