ID | 4732 | ||||||||||||
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Name | CDO36 (GRAINGENES PROBE) | ||||||||||||
Synonyms (11) |
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Type | RFLP | ||||||||||||
Species | Avena sativa (Oat) [ GR_tax:012534 ] | ||||||||||||
Germplasm | |||||||||||||
Description | |||||||||||||
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | CDO36 |
DNA Treatment | |
Source Type | cDNA |
Source Tissue | etiolated leaf |
Source Treatment | etiolated |
Vector | pBluSK- |
Vector Antibiotic Resistance | Ampicillin |
Fragment Size | 1.1 |
Vector Excision Enzyme | EcoRI/XhoI |
Vector Primers | M13 forward/M13 reverse |
Overgo1 | SOG1215 |
Overgo2 |
TCGCCACCGAGGGGCCCTGCACCGCGCCGCAGCCCTCCGCCCTCAAGCTCAAGGCCCGCGCCAAGTGGAATGCTTGGAAT
AAATTGGGTGCTATGCCTACAGAAGAAGCTATGGAGGAGTACATTACAATTGTTGATGAGCTATTCCCTAATTGGGCTGA
TGGCTCCAGTGCAAAAAAGAGAGACGGGGATAACACAATGTCTGCCTCAGGCTCGAAGGGTCCAATGGGACCTGTATTTA
TCAGTTTAATGTACGAGGAAGATCAAGGAAATGAATCAGAACTTGGTGACATCCATGTTTCAGCGA
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell Diploid 1995 | BNL6.32 | C | 0-0 cM | View Comparative Map | |||
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BNL6.32 | E | 30-30 cM | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Barley consensus 2 - 1996 | BNL6.32 | 7H | 55.1-55.1 cM | View Comparative Map | |||
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Barley consensus 2003 | BNL6.32 | 2H | 151.4-151.4 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Composite 2004 | BNL6.32 | 2B | 111-111 cM | View Comparative Map | |||
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BNL6.32 | 2D | 126-126 cM | View Comparative Map | |||||
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Cornell Synthetic/Opata 1995 | BNL6.32 | 2B | 171.6-171.6 cM | View Comparative Map | ||||
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BNL6.32 | 2D | 196.2-196.2 cM | View Comparative Map | |||||
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QTL | Synthetic/Opata RI RFLP/SSR QTL 1995 | BNL6.32 | 2B | 171.6-171.6 cM | View Comparative Map | |||
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BNL6.32 | 2D | 196.2-196.2 cM | View Comparative Map | |||||
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Wheat composite QTL 2004 | BNL6.32 | 2B | 111-111 cM | View Comparative Map | ||||
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BNL6.32 | 2R | 126-126 cM | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | JRGP RFLP 2000 | BNL6.32 | 4 | 128.2-128.2 cM | View Comparative Map | |||
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QTL | Cornell Jef/Oruf BC QTL 2003 | BNL6.32 | 4 | 88.3-88.3 cM | View Comparative Map | |||
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Cornell V20A/glab QTL 2004 | BNL6.32 | 4 | 11.4-11.4 cM | View Comparative Map | ||||
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Cornell V20A/Oruf QTL 1998 | BNL6.32 | 4 | 73.1-73.1 cM | View Comparative Map | ||||
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JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 4 | 128.2-128.2 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell RFLP 1994 | BNL6.32 | 4 | 111.2-111.2 cM | View Comparative Map | |||
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Cornell RFLP 2001 | BNL6.32 | 4 | 88.75-88.75 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Paterson 2003 | BNL6.32 | C | 17.7-17.7 cM | View Comparative Map | |||
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BNL6.32 | D | 6.9-6.9 cM | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell Wilson 1999 | BNL6.32 | 2 | 3.4-3.4 cM | View Comparative Map | |||
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BNL6.32 | 10 | 175.3-175.3 cM | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 34,626,853-34,627,928 bp | View Comparative Map | |||
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Species | Type | Name | Assoc. Type |
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Oryza sativa | QTL | AQBS049 | qtl_marker |
Oryza sativa | QTL | AQDO003 | qtl_marker |
Oryza sativa | QTL | AQDO007 | qtl_marker |
Zea mays subsp. mays | Maize Bin | Bin 10.07 | bin_marker |
Zea mays subsp. mays | Maize Bin | Bin 2.00 | bin_marker |
Oryza sativa | QTL | CQE35 | qtl_marker |
Oryza sativa | QTL | CQN32 | qtl_marker |
Oryza sativa | QTL | CQN12 | qtl_marker |
Avena sativa | Probed Site | cdo36a | maizegdb_to_gramene |
Avena sativa | Probed Site | cdo36b | maizegdb_to_gramene |
Avena sativa | EST | AA231751 | related_sequence |