ID | 4726 | ||||||||||||||||
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Name | CDO1160 (GRAINGENES PROBE) | ||||||||||||||||
Synonyms (13) |
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MAIZEGDB PROBE | p-cdo1160 | ||||||||||||||||
Type | RFLP | ||||||||||||||||
Species | Avena sativa (Oat) [ GR_tax:012534 ] | ||||||||||||||||
Germplasm | |||||||||||||||||
Description | |||||||||||||||||
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | CDO1160 |
DNA Treatment | |
Source Type | cDNA |
Source Tissue | etiolated leaf |
Source Treatment | etiolated |
Vector | pBluSK |
Vector Antibiotic Resistance | Ampicillin |
Fragment Size | 0 |
Vector Excision Enzyme | EcoRI/XhoI |
Vector Primers | M13 forward/M13 reverse |
Overgo1 | SOG0096 |
Overgo2 |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell Diploid 1995 | BNL6.32 | C | 40.1-40.1 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Composite 2004 | BNL6.32 | 1A | 100-100 cM | View Comparative Map | |||
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BNL6.32 | 1B | 72-72 cM | View Comparative Map | |||||
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Cornell Synthetic/Opata 1995 | BNL6.32 | 1A | 127.1-127.1 cM | View Comparative Map | ||||
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QTL | Synthetic/Opata RI RFLP/SSR QTL 1995 | BNL6.32 | 1A | 127.1-127.1 cM | View Comparative Map | |||
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Wheat composite QTL 2004 | BNL6.32 | 1A | 100-100 cM | View Comparative Map | ||||
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BNL6.32 | 1B | 72-72 cM | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | KRGRP 1998 | BNL6.32 | 5 | 99.6-99.6 cM | View Comparative Map | |||
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QTL | Cornell 9024/LH422 RI QTL 1996 | BNL6.32 | 5 | 106.2-106.2 cM | View Comparative Map | |||
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KRGRP Mil23/Gih QTL 1998 | BNL6.32 | 5 | 99.6-99.6 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell RFLP 1994 | BNL6.32 | 5 | 91.7-91.7 cM | View Comparative Map | |||
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Cornell RFLP 2001 | BNL6.32 | 5 | 86-86 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | BNL 1996 | BNL6.32 | 3 | 69.8-69.8 cM | View Comparative Map | |||
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BNL6.32 | 3 | 142.9-142.9 cM | View Comparative Map | |||||
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Cornell Wilson 1999 | BNL6.32 | 3 | 44.3-44.3 cM | View Comparative Map | ||||
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BNL6.32 | 3 | 116.5-116.5 cM | View Comparative Map | |||||
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BNL6.32 | 6 | 163.5-163.5 cM | View Comparative Map | |||||
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BNL6.32 | 8 | 76.9-76.9 cM | View Comparative Map | |||||
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IBM 2002 | BNL6.32 | 8 | 213.3-213.3 cM | View Comparative Map | ||||
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UMC 1998 | BNL6.32 | 3 | 66.6-66.6 cM | View Comparative Map | ||||
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BNL6.32 | 8 | 56.3-56.3 cM | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Klein 2004 | BNL6.32 | LG-03 | 118.4-118.4 cM | View Comparative Map | |||
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Mace 2009 | BNL6.32 | 3 | 98.9-98.9 cM | View Comparative Map | ||||
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Paterson 2003 | BNL6.32 | A | 75.4-75.4 cM | View Comparative Map | ||||
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BNL6.32 | G | 13.1-13.1 cM | View Comparative Map | |||||
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QTL | UGA BTx623/IS3620C RL SSR RFLP QTL 2006 | BNL6.32 | 3 | 95.2-95.2 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 28,517,378-28,517,842 bp | View Comparative Map | |||
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Species | Type | Name | Assoc. Type |
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Sorghum bicolor | QTL | AQGN013 | qtl_marker |
Zea mays subsp. mays | Maize Bin | Bin 3.04 | bin_marker |
Zea mays subsp. mays | Maize Bin | Bin 3.07 | bin_marker |
Zea mays subsp. mays | Maize Bin | Bin 6.08 | bin_marker |
Zea mays subsp. mays | Maize Bin | Bin 8.03 | bin_marker |
Oryza sativa | QTL | CQAS54 | qtl_marker |
Oryza sativa | QTL | CQAS57 | qtl_marker |
Oryza sativa | QTL | CQAS53 | qtl_marker |
Avena sativa | Probed Site | cdo1160a(kri) | maizegdb_to_gramene |
Avena sativa | Probed Site | cdo1160b(kri) | maizegdb_to_gramene |
Avena sativa | Probed Site | cdo1160c(kri) | maizegdb_to_gramene |
Avena sativa | Probed Site | cdo1160d(kri) | maizegdb_to_gramene |
Avena sativa | OVERGO | SOG0096 | related_probe |
Avena sativa | EST | AA231697 | related_sequence |
Avena sativa | EST | AA231698 | related_sequence |
CDO1160 SL Autorad: Survey blot of the probe CDO1160 for the BS125/2/BS125/WLO2 population |