ID | 4722 | ||||||
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Name | CDO328 (GRAINGENES PROBE) | ||||||
Synonyms (5) |
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Type | RFLP | ||||||
Species | Avena sativa (Oat) [ GR_tax:012534 ] | ||||||
Germplasm | |||||||
Description | |||||||
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | CDO328 |
DNA Treatment | |
Source Type | cDNA |
Source Tissue | etiolated leaf |
Source Treatment | etiolated |
Vector | pBluSK |
Vector Antibiotic Resistance | Ampicillin |
Fragment Size | 1.8 |
Vector Excision Enzyme | EcoRI |
Vector Primers | M13 forward/M13 reverse |
Overgo1 | SOG1214 |
Overgo2 |
GGAGAATGTACCGTAGACATAAATGAGCTGAGAGGTGGTCAAAGACATGACAAATGGATATCACTGAAGAATGTCAAGAA
AGGAAGGATACACCTAGCCATAACAATTGAAGATATATCAGAGGAGAAGGATGCAACAACGGGTTTGGAAGAATTACTGA
CCAAAGCCGATGCCAAACTGCCAAAATCAACCTCTGTTTATAGCGAGTCGGATGCTGCTAAATTTGCTGAAGAAAACAAA
GTCGTCAGGGATGAAGTGGAGCAC
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell Diploid 1995 | BNL6.32 | C | 40.1-40.1 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Composite 2004 | BNL6.32 | 3B | 50-50 cM | View Comparative Map | |||
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Cornell Synthetic/Opata 1995 | BNL6.32 | 3B | 103.2-103.2 cM | View Comparative Map | ||||
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QTL | Synthetic/Opata RI RFLP/SSR QTL 1995 | BNL6.32 | 3B | 103.2-103.2 cM | View Comparative Map | |||
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Wheat composite QTL 2004 | BNL6.32 | 3B | 50-50 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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QTL | Minnesota John/Dor F2 QTL 2000 | BNL6.32 | 1a | 81-81 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | TTU IRIR 2000 | BNL6.32 | 1 | 0-0 cM | View Comparative Map | |||
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QTL | JNIG W1944/Peik QTL 2002 | BNL6.32 | 1 | 28.2-28.2 cM | View Comparative Map | |||
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TTU IR58821/IR52561 QTL 2002 | BNL6.32 | 1 | 0-0 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell RFLP 1994 | BNL6.32 | 1 | 39.6-39.6 cM | View Comparative Map | |||
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Cornell RFLP 2001 | BNL6.32 | 1 | 33.3-33.3 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Klein 2004 | BNL6.32 | LG-06 | 93.5-95.5 cM | View Comparative Map | |||
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Paterson 2003 | BNL6.32 | A | 23.1-23.1 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell Wilson 1999 | BNL6.32 | 8 | 67.8-67.8 cM | View Comparative Map | |||
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IBM 2002 | BNL6.32 | 8 | 159.3-159.3 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 7,861,994-7,862,478 bp | View Comparative Map | |||
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Species | Type | Name | Assoc. Type |
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Oryza sativa | QTL | AQAL048 | qtl_marker |
Oryza sativa | QTL | AQAL060 | qtl_marker |
Oryza sativa | QTL | AQF056 | qtl_marker |
Oryza sativa | QTL | AQF084 | qtl_marker |
Oryza sativa | QTL | AQF087 | qtl_marker |
Oryza sativa | QTL | AQF091 | qtl_marker |
Oryza sativa | QTL | AQGC003 | qtl_marker |
Zizania palustris | QTL | AQK011 | qtl_marker |
Zea mays subsp. mays | Maize Bin | Bin 8.02 | bin_marker |
Avena sativa | Probed Site | cdo328 | maizegdb_to_gramene |
Avena sativa | EST | AA231647 | related_sequence |
CDO328 BROWS Autorad: Survey blot of the probe CDO328 for the comparative barley/rice/oat/wheat/sugarcane project |