ID | 47099 |
---|---|
Name | DQF3 (QTL ACCESSION ) |
Synonyms (1) | DQF3-RTNB |
TO TERM | TO:0000084 (root number) |
Trait Name | root number |
Trait Symbol | RTNB |
Type | QTL |
Species | Oryza sativa (Oryza sativa) [ GR_tax:013681 ] |
Germplasm | |
Description | 135 doubled haploid lines derived from a cross IR64 and Azucena were used for QTL mapping. Plants were planted in the greenhouse at Texas Tech University. The wax-petrolatum layer system originally development by Yu et al. (1995) was used to characterize ??e root penetration ability. Total root number (TRN), penetrated root number (PRN), the ratio of penetrated:total roots (or root penetration index) and penetrated root thickness were evaluated 60 days after sowing. The PROC GLM procedure was used to determine association between molecular markers and root traits bt analyzing the mean of four replictions and marker data. With the MAPMAKER/QTL, interval mapping was employed to determine QTLs. A LOD score > 2.0 was considered as threshold to declare significant. |
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | DQF3 |
Chromosome | 1 |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 3,509,004-3,509,959 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI IR64/Azu DH QTL 2003 | BNL6.32 | 1 | 14.1-21 cM | View Comparative Map | |||
|
Species | Type | Name | Assoc. Type |
---|---|---|---|
Oryza sativa | RFLP | RG246 | qtl_marker |
Oryza sativa | RFLP | RG472 | qtl_marker |
Oryza sativa | RFLP | RG532 | qtl_marker |
Term Type | Term Name | Term Accession | |
---|---|---|---|
Plant Structure | root | PO:0009005 | Search |
Plant Growth and Development Stage | sporophyte vegetative stage | PO:0007134 | Search |
Growth Stage | A-vegetative stage | GRO:0007139 | Search |
Environment | unknown environment | EO:0007403 | Search |
Growth Stage | B-reproductive stage | GRO:0007140 | Search |
Plant Growth and Development Stage | sporophyte reproductive stage | PO:0007130 | Search |
Trait | root number | TO:0000084 | Search |
Taxonomy | Oryza sativa | GR_tax:013681 | Search |