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Oryza sativa RFLP "RZ390"
| ID | 4674 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Name | RZ390 (GRAINGENES PROBE) | ||||||||||||
| Synonyms (11) |
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| Deprecated Gramene Marker Acc | 48584365 | ||||||||||||
| MAIZEGDB PROBE | p-rz390U: | ||||||||||||
| Type | RFLP | ||||||||||||
| Species | Oryza sativa (Oryza sativa) [ GR_tax:013681 ] | ||||||||||||
| Germplasm | |||||||||||||
| Description | Plasmids from the Paterson lab | ||||||||||||
| Tags () | None |
Source/Library
Details
| Marker Created: | |
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| Marker Updated: | |
| Internal Marker Accession: | RZ390 |
| DNA Treatment | |
| Source Type | |
| Source Tissue | |
| Source Treatment | |
| Vector | |
| Vector Antibiotic Resistance | |
| Fragment Size | |
| Vector Excision Enzyme | |
| Vector Primers | |
| Overgo1 | |
| Overgo2 |
Database Cross-References (3)
Sequences (4)
Related Sequences (4)
Align All Sequences
Map Positions (66)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 492,280-493,602 bp | View Comparative Map | |||
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| BNL6.32 | Chr. 5 | 493,824-494,181 bp | View Comparative Map | |||||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Physical | Curated FPC Chr OR_CB Feb 2006 | BNL6.32 | 5 | 574,561-574,561 bp | View Comparative Map | |||
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| Curated FPC OR_CB Feb 2006 | BNL6.32 | ctg95 | 456-456 bands | View Comparative Map | ||||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Physical | Curated FPC Chr OR_BB Feb 2006 | BNL6.32 | 3 | 42,766,681-42,766,681 bp | View Comparative Map | |||
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| BNL6.32 | 5 | 657,361-657,361 bp | View Comparative Map | |||||
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| BNL6.32 | 7 | 29,504,641-29,504,641 bp | View Comparative Map | |||||
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| Curated FPC OR_BB Feb 2006 | BNL6.32 | ctg119 | 892-892 bands | View Comparative Map | ||||
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| BNL6.32 | ctg45 | 1,874-1,874 bands | View Comparative Map | |||||
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| BNL6.32 | ctg59 | 498-498 bands | View Comparative Map | |||||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Physical | FPC Chr OC__B Dec 2006 | BNL6.32 | 1 | 85,964,701-85,964,701 bp | View Comparative Map | |||
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| BNL6.32 | 4 | 8,772,361-8,772,361 bp | View Comparative Map | |||||
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| BNL6.32 | 4 | 27,021,871-27,021,871 bp | View Comparative Map | |||||
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| BNL6.32 | 4 | 51,678,451-51,678,451 bp | View Comparative Map | |||||
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| BNL6.32 | 5 | 493,231-493,231 bp | View Comparative Map | |||||
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| BNL6.32 | 5 | 4,811,761-4,811,761 bp | View Comparative Map | |||||
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| BNL6.32 | 5 | 5,788,381-5,788,381 bp | View Comparative Map | |||||
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| BNL6.32 | 5 | 7,919,971-7,919,971 bp | View Comparative Map | |||||
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| BNL6.32 | 5 | 15,643,141-15,643,141 bp | View Comparative Map | |||||
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| BNL6.32 | 9 | 10,111,831-10,111,831 bp | View Comparative Map | |||||
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| FPC OC__B Dec 2006 | BNL6.32 | ctg131 | 237-237 bands | View Comparative Map | ||||
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| BNL6.32 | ctg386 | 349-349 bands | View Comparative Map | |||||
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| BNL6.32 | ctg410 | 152-152 bands | View Comparative Map | |||||
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| BNL6.32 | ctg453 | 101-101 bands | View Comparative Map | |||||
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| BNL6.32 | ctg480 | 127-127 bands | View Comparative Map | |||||
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| BNL6.32 | ctg481 | 359-359 bands | View Comparative Map | |||||
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| BNL6.32 | ctg482 | 69-69 bands | View Comparative Map | |||||
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| BNL6.32 | ctg483 | 401-401 bands | View Comparative Map | |||||
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| BNL6.32 | ctg489 | 266-266 bands | View Comparative Map | |||||
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| BNL6.32 | ctg787 | 81-81 bands | View Comparative Map | |||||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Genetic | Cornell Diploid 1995 | BNL6.32 | A | 11.8-11.8 cM | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Genetic | Cornell Wilson 1999 | BNL6.32 | 3 | 52.7-52.7 cM | View Comparative Map | |||
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| BNL6.32 | 8 | 99.3-99.3 cM | View Comparative Map | |||||
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| BNL6.32 | 8 | 121.7-121.7 cM | View Comparative Map | |||||
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| IBM 2002 | BNL6.32 | 3 | 285.9-285.9 cM | View Comparative Map | ||||
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| BNL6.32 | 6 | 70.4-70.4 cM | View Comparative Map | |||||
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| BNL6.32 | 8 | 329.9-329.9 cM | View Comparative Map | |||||
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| SSR IBM 2001 | BNL6.32 | 8 | 246.6-246.6 cM | View Comparative Map | ||||
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| UMC 1998 | BNL6.32 | 8 | 86.1-86.1 cM | View Comparative Map | ||||
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| BNL6.32 | 8 | 99-99 cM | View Comparative Map | |||||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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| Genetic | JIC LGD1/ICMP 2004 | BNL6.32 | 1 | 78.4-78.4 cM | View Comparative Map | |||
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| QTL | GUA LGD1/ICMP F2 RFLP QTL 2004 | BNL6.32 | 1 | 78.4-78.4 cM | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Genetic | Klein 2004 | BNL6.32 | LG-09 | 3-3 cM | View Comparative Map | |||
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| Mace 2009 | BNL6.32 | 9 | 46.7-46.7 cM | View Comparative Map | ||||
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| QTL | UGA BTx623/IS3620C RL SSR RFLP QTL 2006 | BNL6.32 | 9 | 4.6-4.6 cM | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Genetic | Cornell RFLP 1994 | BNL6.32 | 5 | 0-0 cM | View Comparative Map | |||
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| Cornell RFLP 2001 | BNL6.32 | 5 | 3.3-3.3 cM | View Comparative Map | ||||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Genetic | Huazhong RFLP 1997 | BNL6.32 | 5 | 0-0 cM | View Comparative Map | |||
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Associations (72)
| Species | Type | Name | Assoc. Type |
|---|---|---|---|
| Oryza coarctata | Clone | a0278A12 | hybridisation |
| Oryza sativa | QTL | AQBB127 | qtl_marker |
| Oryza sativa | QTL | AQBB128 | qtl_marker |
| Oryza sativa | QTL | AQBB129 | qtl_marker |
| Oryza sativa | QTL | AQBB130 | qtl_marker |
| Oryza sativa | QTL | AQCK002 | qtl_marker |
| Oryza sativa | QTL | AQDR001 | qtl_marker |
| Oryza sativa | QTL | AQDR010 | qtl_marker |
| Oryza sativa | QTL | AQDR020 | qtl_marker |
| Oryza sativa | QTL | AQDR038 | qtl_marker |
| Oryza sativa | QTL | AQDR068 | qtl_marker |
| Oryza sativa | QTL | AQDR078 | qtl_marker |
| Oryza sativa | QTL | AQDR124 | qtl_marker |
| Oryza sativa | QTL | AQDR126 | qtl_marker |
| Oryza sativa | QTL | AQDR129 | qtl_marker |
| Oryza sativa | QTL | AQDR131 | qtl_marker |
| Oryza sativa | QTL | AQDR145 | qtl_marker |
| Oryza sativa | QTL | AQDR147 | qtl_marker |
| Oryza sativa | QTL | AQDS005 | qtl_marker |
| Oryza sativa | QTL | AQDS007 | qtl_marker |
| Oryza sativa | QTL | AQDS009 | qtl_marker |
| Oryza sativa | QTL | AQDS015 | qtl_marker |
| Oryza sativa | QTL | AQDS019 | qtl_marker |
| Oryza sativa | QTL | AQDS055 | qtl_marker |
| Oryza sativa | QTL | AQDS071 | qtl_marker |
| Oryza sativa | QTL | AQDS072 | qtl_marker |
| Oryza sativa | QTL | AQDX007 | qtl_marker |
| Oryza sativa | QTL | AQEA227 | qtl_marker |
| Oryza sativa | QTL | AQEA228 | qtl_marker |
| Oryza sativa | QTL | AQEA229 | qtl_marker |
| Oryza sativa | QTL | AQEA230 | qtl_marker |
| Oryza sativa | QTL | AQEB002 | qtl_marker |
| Oryza sativa | QTL | AQEB006 | qtl_marker |
| Oryza sativa | QTL | AQEB011 | qtl_marker |
| Oryza sativa | QTL | AQFE062 | qtl_marker |
| Sorghum bicolor | QTL | AQGN058 | qtl_marker |
| Sorghum bicolor | QTL | AQGN059 | qtl_marker |
| Oryza sativa | QTL | AQHE077 | qtl_marker |
| Sorghum bicolor | QTL | AQHL024 | qtl_marker |
| Sorghum bicolor | QTL | AQHL026 | qtl_marker |
| Zea mays subsp. mays | Maize Bin | Bin 3.05 | bin_marker |
| Zea mays subsp. mays | Maize Bin | Bin 6.01 | bin_marker |
| Zea mays subsp. mays | Maize Bin | Bin 8.05 | bin_marker |
| Oryza sativa | QTL | CQAI34 | qtl_marker |
| Oryza sativa | QTL | CQAI40 | qtl_marker |
| Oryza sativa | QTL | CQAS55 | qtl_marker |
| Oryza sativa | QTL | CQAS58 | qtl_marker |
| Oryza sativa | QTL | CQAS60 | qtl_marker |
| Oryza sativa | QTL | CQAS61 | qtl_marker |
| Oryza sativa | QTL | CQAS62 | qtl_marker |
| Oryza sativa | QTL | CQAS64 | qtl_marker |
| Oryza sativa | QTL | CQE36 | qtl_marker |
| Oryza sativa | QTL | CQE37 | qtl_marker |
| Oryza sativa | QTL | CQE38 | qtl_marker |
| Oryza sativa | QTL | CQE39 | qtl_marker |
| Oryza sativa | QTL | CQF7 | qtl_marker |
| Oryza sativa | QTL | CQJ7 | qtl_marker |
| Oryza sativa | QTL | CQK6 | qtl_marker |
| Oryza sativa | QTL | CQQ10 | qtl_marker |
| Oryza sativa | QTL | CQQ21 | qtl_marker |
| Oryza sativa | QTL | CQS7 | qtl_marker |
| Oryza sativa | QTL | CQY4 | qtl_marker |
| Oryza sativa | QTL | DQC9 | qtl_marker |
| Oryza sativa | QTL | DQE38 | qtl_marker |
| Oryza sativa | Probed Site | rz390a(cyb5) | maizegdb_to_gramene |
| Oryza sativa | Probed Site | rz390b(cyb5) | maizegdb_to_gramene |
| Oryza sativa | Probed Site | rz390c(cyb5) | maizegdb_to_gramene |
| Oryza sativa | Probed Site | rz390d(cyb5) | maizegdb_to_gramene |
| Oryza sativa Indica Group | EST | AA231765 | related_sequence |
| Oryza sativa Indica Group | EST | AA231766 | related_sequence |
| Oryza sativa Indica Group | EST | AA231765 | contained_in_sequence |
| Oryza sativa Indica Group | EST | AA231766 | contained_in_sequence |
Associated Ontologies (0)
Images (2)
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RZ390 BROWS Autorad: Survey blot of the probe RZ390 for the comparative barley/rice/oat/wheat/sugarcane project |
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RZ390 SL Autorad: Survey blot of the probe RZ390 for the BS125/2/BS125/WLO2 population |
