ID | 4639 | ||||||||||
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Name | CDO202 (GRAINGENES PROBE) | ||||||||||
Synonyms (9) |
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Type | RFLP | ||||||||||
Species | Avena sativa (Oat) [ GR_tax:012534 ] | ||||||||||
Germplasm | |||||||||||
Description | |||||||||||
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | CDO202 |
DNA Treatment | |
Source Type | cDNA |
Source Tissue | etiolated leaf |
Source Treatment | etiolated |
Vector | pBluSK |
Vector Antibiotic Resistance | Ampicillin |
Fragment Size | 1 |
Vector Excision Enzyme | EcoRI/XhoI |
Vector Primers | M13 forward/M13 reverse |
Overgo1 | SOG0102 |
Overgo2 |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell Diploid 1995 | BNL6.32 | A | 84.2-84.2 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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QTL | Tadmor/Er Apm RI RFLP/AFLP/SSR QTL 1998 | BNL6.32 | 1H | 241.9-241.9 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | JRGP RFLP 2000 | BNL6.32 | 5 | 120.9-120.9 cM | View Comparative Map | |||
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TTU CTIR 2000 | BNL6.32 | 5 | 133.5-133.5 cM | View Comparative Map | ||||
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QTL | CNRRI Tes/CB QTL 1997 | BNL6.32 | 5 | 159.2-159.2 cM | View Comparative Map | |||
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CNRRI Wai/CB QTL 1996 | BNL6.32 | 5 | 141.1-141.1 cM | View Comparative Map | ||||
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Cornell 9024/LH422 RI QTL 1996 | BNL6.32 | 5 | 109.7-109.7 cM | View Comparative Map | ||||
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CTIR CT9993/IR6226 QTL 2000 | BNL6.32 | 5 | 133.5-133.5 cM | View Comparative Map | ||||
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IRRI IR622/IR600 QTL 2003 | BNL6.32 | 5 | 123.9-123.9 cM | View Comparative Map | ||||
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JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 5 | 120.9-120.9 cM | View Comparative Map | ||||
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MU CT9993/IR6226 QTL 2004 | BNL6.32 | 5 | 216.5-216.5 cM | View Comparative Map | ||||
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TNCGEB CT9993/IR6226 QTL 2004 | BNL6.32 | 5 | 99.1-99.1 cM | View Comparative Map | ||||
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UCD Lab/Bla QTL 1998 | BNL6.32 | 5 | 141-141 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell RFLP 1994 | BNL6.32 | 5 | 128.2-128.2 cM | View Comparative Map | |||
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Cornell RFLP 2001 | BNL6.32 | 5 | 116.1-116.1 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Mace 2009 | BNL6.32 | 9 | 164-164 cM | View Comparative Map | |||
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Paterson 2003 | BNL6.32 | G | 7.7-7.7 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell Wilson 1999 | BNL6.32 | 6 | 174.9-174.9 cM | View Comparative Map | |||
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BNL6.32 | 8 | 76.9-76.9 cM | View Comparative Map | |||||
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IBM 2002 | BNL6.32 | 6 | 492.7-492.7 cM | View Comparative Map | ||||
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BNL6.32 | 8 | 222.5-222.5 cM | View Comparative Map | |||||
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SSR IBM 2001 | BNL6.32 | 6 | 422.1-422.1 cM | View Comparative Map | ||||
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UMC 1998 | BNL6.32 | 6 | 158.9-158.9 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 29,094,882-29,095,195 bp | View Comparative Map | |||
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BNL6.32 | Chr. 5 | 29,094,908-29,095,211 bp | View Comparative Map | |||||
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Species | Type | Name | Assoc. Type |
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Oryza sativa | QTL | AQDX008 | qtl_marker |
Oryza sativa | QTL | AQEP005 | qtl_marker |
Oryza sativa | QTL | AQFF039 | qtl_marker |
Oryza sativa | QTL | AQFF041 | qtl_marker |
Oryza sativa | QTL | AQFF042 | qtl_marker |
Hordeum vulgare | QTL | AQGZ053 | qtl_marker |
Hordeum vulgare | QTL | AQGZ054 | qtl_marker |
Hordeum vulgare | QTL | AQGZ055 | qtl_marker |
Zea mays subsp. mays | Maize Bin | Bin 2.04 | bin_marker |
Zea mays subsp. mays | Maize Bin | Bin 5.05 | bin_marker |
Zea mays subsp. mays | Maize Bin | Bin 6.08 | bin_marker |
Zea mays subsp. mays | Maize Bin | Bin 8.03 | bin_marker |
Oryza sativa | QTL | CQAS54 | qtl_marker |
Oryza sativa | QTL | CQAS57 | qtl_marker |
Oryza sativa | QTL | CQAS53 | qtl_marker |
Avena sativa | Probed Site | cdo202a(mcf) | maizegdb_to_gramene |
Avena sativa | Probed Site | cdo202b(mcf) | maizegdb_to_gramene |
Avena sativa | Probed Site | cdo202c(mcf) | maizegdb_to_gramene |
Avena sativa | Probed Site | cdo202e(mcf) | maizegdb_to_gramene |
Avena sativa | EST | AA231908 | related_sequence |
Avena sativa | EST | BE439126 | related_sequence |
Avena sativa | EST | AA231639 | related_sequence |
CDO202 SL Autorad: Survey blot of the probe CDO202 for the BS125/2/BS125/WLO2 population |