Zea mays EST "AW787348"

27685

Name

AW787348 (GenBank Locus Name)

Synonyms (2)

cat2

M58502

GenBank Accession {description

AW787348

GenBank GI {description

7844021

GenBank Version {description

MaizeGDB cDNA - EST

MaizeGDB cDNA - EST

MAIZEGDB EST

Type

Species

Zea mays (Maize) [ GR_tax:014450 ]

Germplasm

Description

945001B05.X1 945 - Mixed adult tissues from Walbot lab, same as 707 (SK) Zea
mays cDNA, mRNA sequence.

Tags ()

None

Source/Library

Details

Marker Created:
Marker Updated:
Internal Marker Accession:	AW787348
Clone
Comment	Contact: Walbot V Department of Biological Sciences Stanford University 855 California Ave, Palo Alto, CA 94304, USA Tel: 650 723 2227 Fax: 650 725 8221 Email: walbot@stanford.edu Plate: 945001 row: B column: 05.
Date Created
Date Updated
Lab Host	DH10B
Map	15
Note	Organ: tassel, kernal, silk, husk, root, leaf; Vector: pGAD10; Site_1: EcoRI; cDNA library from fully differentiated maize tissues from an active Mutator plant. Tissue ratio is 4:2:1:1:1:1 (tassel, kernel, silk, husk, root, leaf). Unidirectionally cloned. New library number given to library 707 for additional sequencing.
Origin	208 bp upstream of AvaI site.
Ref Authors	Walbot,V.
Ref Location	Unpublished (1999)
Ref Medline
Ref Pubmed	2395887
Ref Title	Maize ESTs from various cDNA libraries sequenced at Stanford University
Ref Year	1999

Database Cross-References (10)

PubMed	2821546
PubMed	2395887
PubMed	16668346
PubMed	8639750
PubMed	15020742
Gramene Literature	Bethards-L-A, Skadsen-R-W, Scandalios-J-G, "Isolation and characterization of a cDNA clone for the Cat2 gene in maize and its homology with other catalases", Proceedings of the National Academy of Sciences of the United States of America, 1987, vol. 84, pp. 6830-6834
Gramene Literature	Bethards-L-A, Skadsen-R-W, Scandalios-J-G, "Isolation and characterization of a cDNA clone for the Cat2 gene in maize and its homology with other catalases", Proceedings of the National Academy of Sciences of the United States of America, 1990, vol. 87, pp. 6927-6927
Gramene Literature	Guan-L, Ruzsa-S, Skadsen-R-W, Scandalios-J-G, "Comparison of the Cat2 Complementary DNA Sequences of a Normal Catalase Activity Line (W64A) and a High Catalase Activity Line (R6-67) of Maize", Plant physiology, 1991, vol. 96, pp. 1379-1381
Gramene Literature	Guan-L, Polidoros-A-N, Scandalios-J-G, "Isolation, characterization and expression of the maize Cat2 catalase gene", Plant molecular biology, 1996, vol. 30, pp. 913-924
Gramene Literature	Gardiner-J, Schroeder-S, Polacco-M-L, Sanchez-Villeda-H, Fang-Z, Morgante-M, Landewe-T, Fengler-K, Useche-F, Hanafey-M, Tingey-S, Chou-H, Wing-R, Soderlund-C, "Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization", Plant physiology, 2004, vol. 134, pp. 1317-1326

Sequences (2)

EST Sequence (1)

>AW787348 Zea mays EST [161 bp].

 
          TCCTGTCGCACCTCCCCGAGAGCCTGCACACCTTCTTCTTCCTCTTCGACGACGTGGGCGTGCCGTCCGACTACCGCCAC
ATGGAAGGGTTCGGCGTGAACACGTACACGTTCGTGAGCGCGGCGGGGAAGGCGCAGTACGTCAAGTTCCACTGGAAGCC
G

Related Sequence (1)

>CL1739_1_ov Zea mays subsp. mays OVERGO [40 bp]. Associated to 'AW787348' via contained_in_sequence

 
          ATAATGGCTGGCTGTGTCCAGAACTCTTGCACTCTTCCAG

Align All Sequences

Map Positions (2)

unclassified (1)

Map Type

Map Set

Name

Map

Position

Ext. Links

Genetic

BNL 1996

BNL6.32

40.4-40.4 cM

View Comparative Map

Details

CMap Preview

Oryza sativa Japonica Group (1)

Map Type

Map Set

Name

Map

Position

Ext. Links

Sequence

Gramene Annotated Nipponbare Sequence 2009

p-bnl6.32

Chr. 2

826,600-826,759 bp

Details

Associations (1)

Species	Type	Name	Assoc. Type
Zea mays subsp. mays	OVERGO	CL1739_1_ov	contained_in_sequence

Associated Ontologies (0)

Images (0)