ID | 26 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Name | adh1 (GENE SYMBOL) | ||||||||||||||||
Synonyms (16) |
|
||||||||||||||||
GENE SYMBOL | adh2 | ||||||||||||||||
GENE SYMBOL | AY111936 | ||||||||||||||||
GRAMENE GENE | GR:0200014 | ||||||||||||||||
Type | Gene | ||||||||||||||||
Species | Zea mays subsp. mays (Maize) [ GR_tax:014546 ] | ||||||||||||||||
Germplasm | |||||||||||||||||
Description | Electrophoretic mobility; null alleles are known; dimeric; intra/interlocus hybrid bands occur); SSR umc1726. Encodes a dimeric enzyme (ADH1; E.C. 1.1.1.1) involved in the terminal step of ethanolic fermentation. Intra/interlocus hybrid dimers occur (Schwartz 1966 PNAS 56:1431)--see also adh2. Natural variations found in electrophoretic mobility (slow, fast, superfast allozymes encoded by Adh1-S, -F, and -C alleles, Schwartz and Endo 1966 Genetics 53:709). Variations found in enzyme-specific activity (-Cm allele has 5% normal activity, Schwartz and Endo 1966). Null allele found in IL14H (Stuber and Goodman 1983 Ag Res Results 16:1). Variations in organ specific expression with -1F, -33F, -1S, -54S (Woodman and Freeling 1981; Williams et al. 1991). Some allele pairs are incapable of intragenic recombination (-1S, -1F; Freeling 1976, 1978). A tightly linked duplication is known (-FCm; Schwartz and Endo 1966; Birchler and Schwartz 1979). Many mutants induced by EMS and transposable element insertion have been isolated (cf. Freeling and Birchler 1981 Genetic Engineering p. 223; Freeling and Bennett 1985 Ann. Rev. Genet. 19:297). Molecular clone (Gerlach et al. 1982). Nucleotide sequence of natural alleles (Dennis et al. 1984; Sachs et al. 1986; Osterman and Dennis 1989). Expressed at high levels in the prop root (Schwartz 1979), developing embryo and endosperm (Russell and Sachs 1991), and post-meiotic microspore (Schwartz 1971; Freeling 1976), and anaerobically inducible in root and pre-emergent seedling shoot (cf. Sachs 1991). Not expressed in post-emergent leaf (Okimoto et al. 1980). Regulated by dosage of a factor located elsewhere on chromosome 1L (Birchler 1981). ADH1 null seeds and seedlings are very sensitive to flooding anoxia (Schwartz 1969; Lemke-Keyes and Sachs 1989). Selection against activity in pollen by exposure to allyl alcohol (Schwartz and Osterman 1976). (M. Sachs). bnl(adh1)(pH2.3), npi21(adh1), umc(adh1). Expression (using gel electrophoresis of extract followed by ADH specific staining): kernel (scutellum or aleurone) excellent; seedling (root flooded 24h) excellent; plant (flooded root) very good; pericarp not detected; prop root excellent; pollen very good (to distinguish ADH+ from ADH- one can also use in situ staining of pollen). Viability of ADH1 null plant is good to very good (except under flooding or other low oxygen conditions; i.e. conditional lethal). Primary root tips are very sensitive to anoxia. Induction by anoxia, in the primary root tip, is small and transient relative to induction by hypoxia unless there is a hypoxic pretreatment. This pretreatment allows the root tip to survive anoxia about as long as the more proximal parts of the root can without the hypoxic pretreatment. PCO141653_ov hits 5 BACs, of which 4 are in the same contig as of 28 Sep 05. PCO141653_ov is from AY104325, matched by TIGR to adh1. This gene was originally curated in MaizeGDB Database and the map position was displayed on the maize bins map if feasible. |
||||||||||||||||
Tags () | None |
Marker Created: | |
---|---|
Marker Updated: | |
Internal Marker Accession: | GR:0200014 |
Chromosome | 1 |
Has Phenotype | not curated |
Gramene Diversity Maize Marker | 240 |
---|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Bin | Bins | BNL6.32 | 1 | 199.2-219.3 bins | View Comparative Map | |||
|
||||||||
Genetic | BNL 1996 | BNL6.32 | 1 | 217.9-217.9 cM | View Comparative Map | |||
|
||||||||
Cornell Wilson 1999 | BNL6.32 | 1 | 224.8-224.8 cM | View Comparative Map | ||||
|
||||||||
IBM2 Neighbors 2008 | BNL6.32 | 1 | 902.1-902.1 cM | View Comparative Map | ||||
|
||||||||
UMC 1998 | BNL6.32 | 1 | 205.2-205.2 cM | View Comparative Map | ||||
|
||||||||
QTL | INRA Io/F2 Composite QTL 1996 | BNL6.32 | 1 | 250-250 cM | View Comparative Map | |||
|
||||||||
Maize Bins QTL 2005 | BNL6.32 | 1 | 199.2-199.2 cM | |||||
|
||||||||
BNL6.32 | 1 | 199.2-219.3 cM | View Comparative Map | |||||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Physical | FPC Chr OC__B Dec 2006 | BNL6.32 | 2 | 12,864,571-12,864,571 bp | View Comparative Map | |||
|
||||||||
BNL6.32 | 3 | 58,324,141-58,324,141 bp | View Comparative Map | |||||
|
||||||||
BNL6.32 | 4 | 16,306,111-16,306,111 bp | View Comparative Map | |||||
|
||||||||
BNL6.32 | 4 | 40,519,891-40,519,891 bp | View Comparative Map | |||||
|
||||||||
BNL6.32 | 8 | 25,927,171-25,927,171 bp | View Comparative Map | |||||
|
||||||||
BNL6.32 | 11 | 8,146,291-8,146,291 bp | View Comparative Map | |||||
|
||||||||
BNL6.32 | 11 | 12,088,441-12,088,441 bp | View Comparative Map | |||||
|
||||||||
FPC OC__B Dec 2006 | BNL6.32 | ctg159 | 97-97 bands | View Comparative Map | ||||
|
||||||||
BNL6.32 | ctg342 | 236-236 bands | View Comparative Map | |||||
|
||||||||
BNL6.32 | ctg396 | 171-171 bands | View Comparative Map | |||||
|
||||||||
BNL6.32 | ctg435 | 93-93 bands | View Comparative Map | |||||
|
||||||||
BNL6.32 | ctg751 | 90-90 bands | View Comparative Map | |||||
|
||||||||
BNL6.32 | ctg914 | 354-354 bands | View Comparative Map | |||||
|
||||||||
BNL6.32 | ctg916 | 1,492-1,492 bands | View Comparative Map | |||||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Physical | Curated FPC Chr OG_BB Feb 2006 | BNL6.32 | 7 | 23,237,501-23,237,501 bp | View Comparative Map | |||
|
||||||||
BNL6.32 | 11 | 6,287,501-6,287,501 bp | View Comparative Map | |||||
|
||||||||
Curated FPC OG_BB Feb 2006 | BNL6.32 | ctg138 | 2,729-2,729 bands | View Comparative Map | ||||
|
||||||||
BNL6.32 | ctg97 | 879-879 bands | View Comparative Map | |||||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Physical | Curated FPC Chr OR_BB Feb 2006 | BNL6.32 | 4 | 22,037,401-22,037,401 bp | View Comparative Map | |||
|
||||||||
BNL6.32 | 6 | 11,718,961-11,718,961 bp | View Comparative Map | |||||
|
||||||||
BNL6.32 | 11 | 5,603,401-5,603,401 bp | View Comparative Map | |||||
|
||||||||
Curated FPC OR_BB Feb 2006 | BNL6.32 | ctg182 | 2,622-2,622 bands | View Comparative Map | ||||
|
||||||||
BNL6.32 | ctg54 | 6,238-6,238 bands | View Comparative Map | |||||
|
||||||||
BNL6.32 | ctg87 | 152-152 bands | View Comparative Map | |||||
|