Zea mays subsp. mays RFLP "CSU61"

Name

CSU61

Synonyms (14)

CSU061	CSU061E5	csu61a	csu61b
csu61c	CSU61E5	csuh00061	p-umc161
p-umc161b	umc161	umc161a	umc161b.A
umc161c	umc342

Deprecated Gramene Marker Acc

48583015

Deprecated Gramene Marker Acc

48583377

Deprecated Gramene Marker Acc

MGDB:csu61a

Deprecated Gramene Marker Acc

MGDB:csu61b

Deprecated Gramene Marker Acc

MGDB:umc161a

Deprecated Gramene Marker Acc

umc161b

MAIZEGDB PROBE

p-csu61

Type

RFLP

Species

Zea mays subsp. mays (Maize) [ GR_tax:014546 ]

Germplasm

Description

Tags ()

None

Source/Library

Details

Marker Created:
Marker Updated:
Internal Marker Accession:	CSU61
DNA Treatment
Source Type
Source Tissue
Source Treatment
Vector
Vector Antibiotic Resistance
Fragment Size
Vector Excision Enzyme
Vector Primers
Overgo1	SOG1475
Overgo2

Database Cross-References (0)

Sequences (4)

Related Sequences (4)

>G10824 Zea mays Genomic DNA [411 bp]. Associated to 'CSU61' via contained_in_sequence

 
          CTGCAGACAGACCTTGGTTGGAGGCAACTATGGCCTGCTCAACACAAGTACATTTGAACCAAACCCTGACTATTACAGGT
AGATTAGACTAGACACGCACAAGGTTTTTTCTCTCTCTCTCTCTCTCTCCAAATTAAGCACCATCATAATCTACCATCTT
TCTGTAGTGCTGTGGTGTGGCACCGCCTCATGGGCACCAAGGTCCTCTCGACGGTATNCAACGGCACAAACAAGATCCGT
GTCTACGCACACTGCGCGAAAAACTCGGTAAGGNCTTGNTCGGTTAGGGGGTGGATTGATGGGGATAAATCCTCTCATAT
ACAAATTTNCAAGNTTGAACCACGTACAATGNGATGGAAAGCTCCTGTTTCTTTCCGGAAANAGCTCCTGTGGATTGTCT
TGAAGTCTTGA

>G10825 Zea mays Genomic DNA [367 bp]. Associated to 'CSU61' via contained_in_sequence

 
          CTGCAGGTTCCCGTCCTTGGGAGTCAGATGGTACTCCTGTCTCGTGAGCGCGGCTGCTGCTGCTGCTTCGCCGAGCCCTT
CGCTCCCCTTCTTCCTTCCGCTCTGGGCGTGCGCGCCTTGGCTCGTCACGTAGATGCGGTTCGTGCTGCTGCCGTCCAGG
TTGATCAGGAGCAGAGTGATCCCTTCCTGAAAAGTTTCCAATGAAGCATGCATGTTAAAGCGTGCATGGTTCAGACTTCA
GACAGTCAACAGGAGCTGTTGCCGGAAAGAAACAGGAGCTTTCCATCGCATGTACGTGGTTCAGCTGAAAATTTGGTATT
TTGAGAGGATTTATCCCCCATCAATCCACCCCTTAACCCGAACAAGG

>T12691 Zea mays EST [252 bp]. Associated to 'CSU61' via contained_in_sequence

 
          AGCAAGGGAGGGAATCCTCTACCGTGGATGGTACCGATCTGGGTGACATCGACTCGGGCTGGGTTATCCTCAAGAACTCG
GATGTCGTTTCCGCGGATTTGGCAGCCGCCGCCGTCTGTGGGCTCAGCGTCTAGGCTCTTCTACGATTCCTAGCTGGGCA
CGGTGGGTTCTCGGAGGTGTGGTTTACACGCTCGTGCCGTTCTACAACAGAGTTAGGCATCTCGAAGACGAGACGGTGGG
ATTCGTGGAGAA

>T12691 Zea mays EST [252 bp]. Associated to 'CSU61' via related_sequence

 
          AGCAAGGGAGGGAATCCTCTACCGTGGATGGTACCGATCTGGGTGACATCGACTCGGGCTGGGTTATCCTCAAGAACTCG
GATGTCGTTTCCGCGGATTTGGCAGCCGCCGCCGTCTGTGGGCTCAGCGTCTAGGCTCTTCTACGATTCCTAGCTGGGCA
CGGTGGGTTCTCGGAGGTGTGGTTTACACGCTCGTGCCGTTCTACAACAGAGTTAGGCATCTCGAAGACGAGACGGTGGG
ATTCGTGGAGAA

Align All Sequences

Map Positions (40)

Sorghum bicolor (4)

Map Type

Map Set

Name

Map

Position

Ext. Links

Genetic

Klein 2004

BNL6.32

LG-01

16.1-19 cM

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Mace 2009

BNL6.32

13-13 cM

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Details

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Paterson 2003

BNL6.32

0.8-0.8 cM

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Details

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QTL

UGA BTx623/S. propinquum F2 RFLP SSR QTL 2006

BNL6.32

0-0 cM

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unclassified (34)

Map Type

Map Set

Name

Map

Position

Ext. Links

Bin

Bins

BNL6.32

219.3-219.3 bins

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BNL6.32

104.4-104.4 bins

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Details

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Genetic

BNL 1996

BNL6.32

66.6-66.6 cM

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Details

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IBM 2002

BNL6.32

853.1-853.1 cM

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Details

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IBM2 Neighbors 2008

BNL6.32

509.58-509.58 cM

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Details

CMap Preview

BNL6.32

963.6-963.6 cM

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Details

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BNL6.32

364.49-364.49 cM

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Details

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SSR IBM 2001

BNL6.32

611.1-611.1 cM

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Details

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UMC 1998

BNL6.32

219.3-219.3 cM

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Details

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BNL6.32

104.4-104.4 cM

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Details

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Physical

AGI FPC Oct 2004

BNL6.32

ctg31

848-855 bands

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Details

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BNL6.32

ctg80

2,261-2,294 bands

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Details

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BNL6.32

ctg108

40-53 bands

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Details

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BNL6.32

ctg193

81-103 bands

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Curated AGI FPC Oct 2004

BNL6.32

ctg31.1

848-855 bands

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Details

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BNL6.32

ctg80.2

2,261-2,294 bands

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Details

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BNL6.32

ctg108.3

40-53 bands

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Details

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BNL6.32

ctg193.4

81-103 bands

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Details

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FPC Chr maize May 2006

BNL6.32

147,803,601-147,803,601 bp

Details

BNL6.32

259,646,101-259,646,101 bp

Details

BNL6.32

204,134,001-204,134,001 bp

Details

BNL6.32

248,351,601-248,351,601 bp

Details

FPC maize May 2006

BNL6.32

ctg37

859-859 bands

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BNL6.32

ctg61

298-298 bands

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Details

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BNL6.32

ctg91

2,277-2,277 bands

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Details

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BNL6.32

ctg201

92-92 bands

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Details

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QTL

Bologna Os420/Iab78 QTL 1998

BNL6.32

116.4-116.4 cM

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Details

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BNL6.32

69.7-69.7 cM

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Details

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CIMMYT Ac7729/Ac7643S QTL 1996

BNL6.32

140-140 cM

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Details

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BNL6.32

246-246 cM

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Details

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INRA Io/F2 Composite QTL 1996

BNL6.32

158-158 cM

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Details

CMap Preview

BNL6.32

264-264 cM

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Details

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Maize Bins QTL 2005

BNL6.32

219.3-219.3 cM

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Details

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BNL6.32

104.4-104.4 cM

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Details

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Oryza sativa Japonica Group (2)

Map Type

Map Set

Name

Map

Position

Ext. Links

Sequence

Gramene Annotated Nipponbare Sequence 2009

BNL6.32

Chr. 9

15,508,404-15,508,438 bp

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Details

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BNL6.32

Chr. 12

23,900,999-23,901,034 bp

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Associations (131)

Species	Type	Name	Assoc. Type
Zea mays subsp. mays	QTL	AQFS088	qtl_marker
Zea mays subsp. mays	QTL	AQFS092	qtl_marker
Zea mays subsp. mays	QTL	AQFS093	qtl_marker
Zea mays subsp. mays	QTL	AQFS1001	qtl_marker
Zea mays subsp. mays	QTL	AQFS1012	qtl_marker
Zea mays subsp. mays	QTL	AQFS1015	qtl_marker
Zea mays subsp. mays	QTL	AQFS1028	qtl_marker
Zea mays subsp. mays	QTL	AQFS1045	qtl_marker
Zea mays subsp. mays	QTL	AQFS1061	qtl_marker
Zea mays subsp. mays	QTL	AQFS1068	qtl_marker
Zea mays subsp. mays	QTL	AQFS1069	qtl_marker
Zea mays subsp. mays	QTL	AQFS1074	qtl_marker
Zea mays subsp. mays	QTL	AQFS1086	qtl_marker
Zea mays subsp. mays	QTL	AQFS1103	qtl_marker
Zea mays subsp. mays	QTL	AQFS1138	qtl_marker
Zea mays subsp. mays	QTL	AQFS1147	qtl_marker
Zea mays subsp. mays	QTL	AQFS1148	qtl_marker
Zea mays subsp. mays	QTL	AQFS1157	qtl_marker
Zea mays subsp. mays	QTL	AQFS1159	qtl_marker
Zea mays subsp. mays	QTL	AQFS1206	qtl_marker
Zea mays subsp. mays	QTL	AQFS1282	qtl_marker
Zea mays subsp. mays	QTL	AQFS1285	qtl_marker
Zea mays subsp. mays	QTL	AQFS1300	qtl_marker
Zea mays subsp. mays	QTL	AQFS1302	qtl_marker
Zea mays subsp. mays	QTL	AQFS1309	qtl_marker
Zea mays subsp. mays	QTL	AQFS1360	qtl_marker
Zea mays subsp. mays	QTL	AQFS1494	qtl_marker
Zea mays subsp. mays	QTL	AQFS156	qtl_marker
Zea mays subsp. mays	QTL	AQFS161	qtl_marker
Zea mays subsp. mays	QTL	AQFS166	qtl_marker
Zea mays subsp. mays	QTL	AQFS185	qtl_marker
Zea mays subsp. mays	QTL	AQFS198	qtl_marker
Zea mays subsp. mays	QTL	AQFS207	qtl_marker
Zea mays subsp. mays	QTL	AQFS210	qtl_marker
Zea mays subsp. mays	QTL	AQFS293	qtl_marker
Zea mays subsp. mays	QTL	AQFS298	qtl_marker
Zea mays subsp. mays	QTL	AQFS302	qtl_marker
Zea mays subsp. mays	QTL	AQFS315	qtl_marker
Zea mays subsp. mays	QTL	AQFS332	qtl_marker
Zea mays subsp. mays	QTL	AQFS353	qtl_marker
Zea mays subsp. mays	QTL	AQFS362	qtl_marker
Zea mays subsp. mays	QTL	AQFS366	qtl_marker
Zea mays subsp. mays	QTL	AQFS373	qtl_marker
Zea mays subsp. mays	QTL	AQFS395	qtl_marker
Zea mays subsp. mays	QTL	AQFS398	qtl_marker
Zea mays subsp. mays	QTL	AQFS400	qtl_marker
Zea mays subsp. mays	QTL	AQFS404	qtl_marker
Zea mays subsp. mays	QTL	AQFS410	qtl_marker
Zea mays subsp. mays	QTL	AQFS427	qtl_marker
Zea mays subsp. mays	QTL	AQFS429	qtl_marker
Zea mays subsp. mays	QTL	AQFS430	qtl_marker
Zea mays subsp. mays	QTL	AQFS434	qtl_marker
Zea mays subsp. mays	QTL	AQFS436	qtl_marker
Zea mays subsp. mays	QTL	AQFS439	qtl_marker
Zea mays subsp. mays	QTL	AQFS498	qtl_marker
Zea mays subsp. mays	QTL	AQFS518	qtl_marker
Zea mays subsp. mays	QTL	AQFS544	qtl_marker
Zea mays subsp. mays	QTL	AQFS572	qtl_marker
Zea mays subsp. mays	QTL	AQFS576	qtl_marker
Zea mays subsp. mays	QTL	AQFS621	qtl_marker
Zea mays subsp. mays	QTL	AQFS632	qtl_marker
Zea mays subsp. mays	QTL	AQFS633	qtl_marker
Zea mays subsp. mays	QTL	AQFS650	qtl_marker
Zea mays subsp. mays	QTL	AQFS676	qtl_marker
Zea mays subsp. mays	QTL	AQFS699	qtl_marker
Zea mays subsp. mays	QTL	AQFS704	qtl_marker
Zea mays subsp. mays	QTL	AQFS705	qtl_marker
Zea mays subsp. mays	QTL	AQFS706	qtl_marker
Zea mays subsp. mays	QTL	AQFS719	qtl_marker
Zea mays subsp. mays	QTL	AQFS722	qtl_marker
Zea mays subsp. mays	QTL	AQFS723	qtl_marker
Zea mays subsp. mays	QTL	AQFS732	qtl_marker
Zea mays subsp. mays	QTL	AQFS733	qtl_marker
Zea mays subsp. mays	QTL	AQFS778	qtl_marker
Zea mays subsp. mays	QTL	AQFS798	qtl_marker
Zea mays subsp. mays	QTL	AQFS814	qtl_marker
Zea mays subsp. mays	QTL	AQFS822	qtl_marker
Zea mays subsp. mays	QTL	AQFS844	qtl_marker
Zea mays subsp. mays	QTL	AQFS852	qtl_marker
Zea mays subsp. mays	QTL	AQFS860	qtl_marker
Zea mays subsp. mays	QTL	AQFS865	qtl_marker
Zea mays subsp. mays	QTL	AQFS915	qtl_marker
Zea mays subsp. mays	QTL	AQFS921	qtl_marker
Zea mays subsp. mays	QTL	AQFS927	qtl_marker
Zea mays subsp. mays	QTL	AQFS941	qtl_marker
Zea mays subsp. mays	QTL	AQFS956	qtl_marker
Zea mays subsp. mays	QTL	AQFS974	qtl_marker
Zea mays subsp. mays	QTL	AQFS985	qtl_marker
Zea mays subsp. mays	QTL	AQFS999	qtl_marker
Sorghum bicolor	QTL	AQGO003	qtl_marker
Sorghum bicolor	QTL	AQGO011	qtl_marker
Sorghum bicolor	QTL	AQGO019	qtl_marker
Sorghum bicolor	QTL	AQGO026	qtl_marker
Sorghum bicolor	QTL	AQGO030	qtl_marker
Zea mays subsp. mays	Maize Bin	Bin 1.06	bin_marker
Zea mays subsp. mays	Maize Bin	Bin 1.11	bin_marker
Zea mays subsp. mays	Maize Bin	Bin 10.04	bin_marker
Zea mays subsp. mays	Maize Bin	Bin 2.06	bin_marker
Zea mays subsp. mays	Maize Bin	Bin 3.04	bin_marker
Zea mays subsp. mays	Maize Bin	Bin 9.06	bin_marker
Zea mays subsp. mays	QTL	DQI1	qtl_marker
Zea mays subsp. mays	QTL	DQI2	qtl_marker
Zea mays subsp. mays	QTL	DQI3	qtl_marker
Zea mays subsp. mays	QTL	DQI4	qtl_marker
Zea mays subsp. mays	QTL	DQJ2	qtl_marker
Zea mays subsp. mays	QTL	DQJ1	qtl_marker
Zea mays subsp. mays	QTL	DQL35	qtl_marker
Zea mays subsp. mays	QTL	DQK8	qtl_marker
Zea mays subsp. mays	QTL	DQK15	qtl_marker
Zea mays subsp. mays	QTL	DQL20	qtl_marker
Zea mays subsp. mays	QTL	DQO13	qtl_marker
Zea mays subsp. mays	QTL	DQO12	qtl_marker
Zea mays subsp. mays	QTL	DQO8	qtl_marker
Zea mays subsp. mays	QTL	DQO6	qtl_marker
Zea mays subsp. mays	QTL	DQO7	qtl_marker
Zea mays subsp. mays	QTL	DQO9	qtl_marker
Zea mays subsp. mays	QTL	DQQ5	qtl_marker
Zea mays subsp. mays	Probed Site	umc161b	maizegdb_to_gramene
Zea mays	Clone	ZMMBBb0017K17	hybridisation
Zea mays	Clone	ZMMBBb0161H08	hybridisation
Zea mays	Clone	ZMMBBb0210P02	hybridisation
Zea mays	Clone	ZMMBBb0246P04	hybridisation
Zea mays	OVERGO	SOG1475	related_probe
Zea mays	Clone	ZMMBBb0101F15	hybridisation
Zea mays	Clone	ZMMBBb0140L14	hybridisation
Zea mays	Clone	ZMMBBb0170L16	hybridisation
Zea mays	Clone	ZMMBBb0244B02	hybridisation
Zea mays	Genomic DNA	G10824	contained_in_sequence
Zea mays	Genomic DNA	G10825	contained_in_sequence
Zea mays	EST	T12691	contained_in_sequence
Zea mays	EST	T12691	related_sequence

Associated Ontologies (0)

Images (0)