ID | 17714 | ||||||
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Name | CDO533 | ||||||
Synonyms (6) |
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Type | RFLP | ||||||
Species | Avena sativa (Oat) [ GR_tax:012534 ] | ||||||
Germplasm | |||||||
Description | |||||||
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | CDO533 |
DNA Treatment | |
Source Type | cDNA |
Source Tissue | seedling leaf |
Source Treatment | etiolated |
Vector | pBluescript SK |
Vector Antibiotic Resistance | Ampicillin |
Fragment Size | 1.5 |
Vector Excision Enzyme | EcoRI/XhoI |
Vector Primers | M13 forward/M13 reverse |
Overgo1 | SOG0091 |
Overgo2 |
ANNTCCGCTGCTAGNNNNNGNNNNNAAAACTNCTGCAATGGCAACTGGCGTTCTGTTTGGACTCTGGAATTCAGTTATGC
GTNNCAACTTGTTGAAATTAAAGGAAAGANNNAGGTAGGTGCTCATTATTTTGAAGAGGGAAATGTGCAGCTGGATACTG
ATGTTGATCACAAGGACTCCACACTAATGCAGACTGATGATATTGCATGGTCTCAAACTCAGACAGCTCAGACAAGGGAT
TGCCAAGCAGCTGATGATATTGCATGGTCTCAGTTGTAAGATATGGCTGTGAACAATGGTTGTGGGATATGAATGTAAGA
TATGGCTGTGAACAAATGTAAGATATGACTGTAAAATATGACTGTAAGATATGACTATAATGTGGTTTGTAATATATGTG
GTTTGTAATGTTACTGTAAGATATGACTATAATGTGGTTTGTAATATATGTTAGCCA
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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QTL | Cornell 9024/LH422 RI QTL 1996 | BNL6.32 | 7 | 45.1-45.1 cM | View Comparative Map | |||
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IRRI Mor/CO39 QTL 1994 | BNL6.32 | 7 | 11.4-11.4 cM | View Comparative Map | ||||
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UCD Lab/Bla QTL 1998 | BNL6.32 | 7 | 0-0 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell RFLP 1994 | BNL6.32 | 7 | 71.5-71.5 cM | View Comparative Map | |||
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Cornell RFLP 2001 | BNL6.32 | 7 | 37.6-37.6 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Huazhong RFLP 1997 | BNL6.32 | 7 | 66-66 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Paterson 2003 | BNL6.32 | B | 6.2-6.2 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell Wilson 1999 | BNL6.32 | 2 | 191.6-191.6 cM | View Comparative Map | |||
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BNL6.32 | 7 | 160-160 cM | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 7 | 13,074,864-13,075,056 bp | View Comparative Map | |||
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BNL6.32 | Chr. 11 | 7,218,752-7,218,783 bp | View Comparative Map | |||||
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Species | Type | Name | Assoc. Type |
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Oryza sativa | QTL | AQEN007 | qtl_marker |
Oryza sativa | QTL | AQEN038 | qtl_marker |
Oryza sativa | QTL | AQEN044 | qtl_marker |
Oryza sativa | QTL | AQEN048 | qtl_marker |
Oryza sativa | QTL | AQEN050 | qtl_marker |
Oryza sativa | QTL | AQEN054 | qtl_marker |
Oryza sativa | QTL | AQEN058 | qtl_marker |
Oryza sativa | QTL | AQEP014 | qtl_marker |
Oryza sativa | QTL | AQHP010 | qtl_marker |
Oryza sativa | QTL | AQHP028 | qtl_marker |
Oryza sativa | QTL | AQHP043 | qtl_marker |
Oryza sativa | QTL | AQHP053 | qtl_marker |
Oryza sativa | QTL | AQHP073 | qtl_marker |
Oryza sativa | QTL | AQHP083 | qtl_marker |
Zea mays subsp. mays | Maize Bin | Bin 2.08 | bin_marker |
Zea mays subsp. mays | Maize Bin | Bin 7.05 | bin_marker |
Oryza sativa | QTL | CQAS91 | qtl_marker |
Oryza sativa | QTL | CQAS82 | qtl_marker |
Oryza sativa | QTL | CQAS81 | qtl_marker |
Oryza sativa | QTL | CQAV3 | qtl_marker |
Oryza sativa | QTL | CQAX7 | qtl_marker |
Oryza sativa | QTL | CQAW23 | qtl_marker |
Avena sativa | Probed Site | cdo533a | maizegdb_to_gramene |
Avena sativa | Probed Site | cdo533b | maizegdb_to_gramene |
Avena sativa | EST | AI978373 | related_sequence |
CDO533 SL Autorad: Survey blot of the probe CDO533 for the BS125/2/BS125/WLO2 population |