ID | 11444 |
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Name | RM556 |
Synonyms (0) | None. |
Type | SSR |
Species | Oryza sativa Japonica Group (Oryza sativa japonica) [ GR_tax:013684 ] |
Germplasm | |
Description | |
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | RM556 |
Repeat Motif | (CCAG)6 |
Anneal Temperature | 55 |
Expected PCR Product Size | 93 |
Sequence Source | AQ872330 |
Linkage Group | |
Remarks |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 8 | 22,339,816-22,340,011 bp | View Comparative Map | |||
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BNL6.32 | Chr. 8 | 22,339,914-22,340,006 bp | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Genetic | Cornell SSR 2001 | BNL6.32 | 8 | 90.3-90.3 cM | View Comparative Map | |||
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IRMI 2003 | BNL6.32 | 8 | 86.7-86.7 cM | View Comparative Map | ||||
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QTL | CNHAU Zhenshan 97/IRAT109 SSR QTL 2006 | BNL6.32 | 8 | 73.3-73.3 cM | View Comparative Map | |||
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Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 8 | 90.3-90.3 cM | View Comparative Map | ||||
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Species | Type | Name | Assoc. Type |
---|---|---|---|
Oryza sativa | QTL | AQGP009 | qtl_marker |
Oryza sativa | QTL | AQGP040 | qtl_marker |
Oryza sativa | QTL | AQGP074 | qtl_marker |
Oryza sativa | QTL | AQHF022 | qtl_marker |
Oryza sativa | QTL | AQHF026 | qtl_marker |
Oryza sativa | QTL | AQHF045 | qtl_marker |
Oryza sativa Japonica Group | SSR | AUT23242 | equivalent_to |
Oryza sativa | QTL | CQAP1 | qtl_marker |
Oryza sativa Japonica Group | Primer | RM556_forward | primer_forward |
Oryza sativa Japonica Group | Primer | RM556_reverse | primer_reverse |
Oryza sativa Japonica Group | GSS | AQ872330 | contained_in_sequence |
Oryza sativa Japonica Group | GSS | AQ872330 | source_sequence |