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Oryza sativa Japonica Group SSR "RM111"
| ID | 11351 |
|---|---|
| Name | RM111 |
| Synonyms (0) | None. |
| Type | SSR |
| Species | Oryza sativa Japonica Group (Oryza sativa japonica) [ GR_tax:013684 ] |
| Germplasm | |
| Description | |
| Tags () | None |
Source/Library
Details
| Marker Created: | |
|---|---|
| Marker Updated: | |
| Internal Marker Accession: | RM111 |
| Repeat Motif | (GA)9 |
| Anneal Temperature | 55 |
| Expected PCR Product Size | 124 |
| Sequence Source | D22423 |
| Linkage Group | |
| Remarks |
Database Cross-References (1)
Sequences (4)
Related Sequences (4)
Align All Sequences
Map Positions (9)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 5,096,744-5,096,867 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Genetic | Cornell SSR 2001 | BNL6.32 | 6 | 35.3-35.3 cM | View Comparative Map | |||
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| QTL | CNHAU Zhen97/ H94 QTL 2005 | BNL6.32 | 6 | 28.3-28.3 cM | View Comparative Map | |||
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| CNHAU Zhenshan 97/IRAT109 SSR QTL 2006 | BNL6.32 | 6 | 34.2-34.2 cM | View Comparative Map | ||||
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| CNHZAU Zhe97/Wuy2 QTL 2004 | BNL6.32 | 6 | 39.9-39.9 cM | View Comparative Map | ||||
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| CNRRI XeiB/Mil46 RI QTL 2002 | BNL6.32 | 6 | 61.5-61.5 cM | View Comparative Map | ||||
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| CNYU Bal/Nan//Bal BC1 QTL 2001 | BNL6.32 | 6a | 114.8-114.8 cM | View Comparative Map | ||||
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| Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 6 | 35.3-35.3 cM | View Comparative Map | ||||
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| TKU Integrated QTL 2002 | BNL6.32 | 6 | 77.6-77.6 cM | View Comparative Map | ||||
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Associations (19)
| Species | Type | Name | Assoc. Type |
|---|---|---|---|
| Oryza sativa | QTL | AQCD003 | qtl_marker |
| Oryza sativa | QTL | AQEI022 | qtl_marker |
| Oryza sativa | QTL | AQEI096 | qtl_marker |
| Oryza sativa | QTL | AQFJ020 | qtl_marker |
| Oryza sativa | QTL | AQFJ052 | qtl_marker |
| Oryza sativa | QTL | AQGA003 | qtl_marker |
| Oryza sativa | QTL | AQGA008 | qtl_marker |
| Oryza sativa | QTL | AQGA022 | qtl_marker |
| Oryza sativa | QTL | AQGA026 | qtl_marker |
| Oryza sativa | QTL | AQGA031 | qtl_marker |
| Oryza sativa | QTL | AQGP008 | qtl_marker |
| Oryza sativa | QTL | AQGP030 | qtl_marker |
| Oryza sativa | QTL | AQGP048 | qtl_marker |
| Oryza sativa | QTL | AQHF012 | qtl_marker |
| Oryza sativa | QTL | AQHF036 | qtl_marker |
| Oryza sativa Japonica Group | Primer | RM111_forward | primer_forward |
| Oryza sativa Japonica Group | Primer | RM111_reverse | primer_reverse |
| Oryza sativa Japonica Group | EST | D22423 | contained_in_sequence |
| Oryza sativa Japonica Group | EST | D22423 | source_sequence |
Associated Ontologies (0)
Images (1)
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