ID | 11342 |
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Name | RG172 |
Synonyms (0) | None. |
Type | RFLP |
Species | Oryza sativa (Oryza sativa) [ GR_tax:013681 ] |
Germplasm | |
Description | |
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | RG172 |
DNA Treatment | PstI-digested |
Source Type | Genomic |
Source Tissue | leaf |
Source Treatment | |
Vector | pUC8 |
Vector Antibiotic Resistance | Ampicillin |
Fragment Size | 1.8 |
Vector Excision Enzyme | PstI |
Vector Primers | M13 forward/M13 reverse |
Overgo1 | |
Overgo2 |
Gramene Literature | McCouch-S-R, Kochert-G, Yu-Z-H, Wang-Z-Y, Khush-G-S, Coffman-W-R, Tanksley-S-D, "Molecular mapping of rice chromosomes", Theoretical and applied genetics, 1988, vol. 76, pp. 815-829 |
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Gramene Diversity Rice Marker | 739 |
Gramene Diversity Rice Marker | 1322 |
ACGCACTACAAGCGGAACACGGGATCAAGCCCTTCATGTGCCGCAAGTGCGNAANGGCGTTCGCCGTNCCGCGGCGANCT
GGCGCACCCACGAGAAGAACTGCGGCAAGCTCTGGTACTGCGCCTGCGGCTCCGACTTCAAGCACAAGCGCTCCCTCAAG
GACCACATCCGCGCCTTCGGCCGCGGCCACGCCGNCTGGCGGCATNCGACTCCTTCGACGACCTCGACGCCGATGACGAC
CCCTCCTCCGACCTCGACCACGCCTCCGCCTCCGCCTCCGCTTCGCGAGTAGGGTGAGTGTTTGATCGATATCGAGATCG
AGATCGAGATCGAGCTGAGCTAATTAATTTCCATGATAATTAGTTAACCGTGCTGCTACTACTACTATGTCTGTGATTCT
GTGTACANCACGGGATTGGAATGGAGAGATATNGGGGTATAGATGATGCATGATANGGGATTTTCAAGGGTTTTTTTTNA
ATTTTGGGGGANATTAATGAATTAGTTGATATGGGACAATTATNCAAATTNANANACAATGGGACGATTTCNAAANCACG
CNGTTGNNAACGTGGNGGGGGAAAACCAAAGGGTTTTNTGGNNCTTTTTTNTGGAAAGGAATGGGG
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 24,454,713-24,455,212 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell SSR 2001 | BNL6.32 | 6 | 106.8-106.8 cM | View Comparative Map | |||
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TTU CTIR 2000 | BNL6.32 | 6 | 112.4-112.4 cM | View Comparative Map | ||||
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QTL | CIRAD IR64/Azu DH QTL 2003 | BNL6.32 | 6 | 133-133 cM | View Comparative Map | |||
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Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 6 | 106.8-106.8 cM | View Comparative Map | ||||
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CTIR CT9993/IR6226 QTL 2000 | BNL6.32 | 6 | 112.4-112.4 cM | View Comparative Map | ||||
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IGCAS ZYQ8/JX17 F2 QTL 1995 | BNL6.32 | 6 | 110-110 cM | View Comparative Map | ||||
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IRRI IR64/Azu DH QTL 2003 | BNL6.32 | 6 | 123.8-123.8 cM | View Comparative Map | ||||
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IRRI Mor/CO39 QTL 1994 | BNL6.32 | 6 | 60.6-60.6 cM | View Comparative Map | ||||
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MU CT9993/IR6226 QTL 2004 | BNL6.32 | 6 | 126.5-126.5 cM | View Comparative Map | ||||
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TNCGEB CT9993/IR6226 QTL 2004 | BNL6.32 | 6 | 99.1-99.1 cM | View Comparative Map | ||||
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TTU IR64/Orufi RI QTL 2003 | BNL6.32 | 6 | 131.7-131.7 cM | View Comparative Map | ||||
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Zejiang IR64/Azu DH QTL 2001 | BNL6.32 | 6 | 128.3-128.3 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Genetic | Cornell RFLP 1994 | BNL6.32 | 6 | 96.1-96.1 cM | View Comparative Map | |||
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Cornell RFLP 2001 | BNL6.32 | 6 | 80.3-80.3 cM | View Comparative Map | ||||
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