ID | 11336 |
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Name | RM435 |
Synonyms (0) | None. |
Type | SSR |
Species | Oryza sativa Japonica Group (Oryza sativa japonica) [ GR_tax:013684 ] |
Germplasm | |
Description | |
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | RM435 |
Repeat Motif | (ATG)7 |
Anneal Temperature | 55 |
Expected PCR Product Size | 166 |
Sequence Source | AQ287875 |
Linkage Group | |
Remarks |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 537,320-537,430 bp | View Comparative Map | |||
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BNL6.32 | Chr. 6 | 537,327-537,492 bp | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Genetic | Cornell SSR 2001 | BNL6.32 | 6 | 2.2-2.2 cM | View Comparative Map | |||
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IRMI 2003 | BNL6.32 | 6 | 2.8-2.8 cM | View Comparative Map | ||||
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QTL | CNHAU Zhen97/ H94 QTL 2005 | BNL6.32 | 6 | 0.6-0.6 cM | View Comparative Map | |||
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CNHAU Zhenshan 97/IRAT109 SSR QTL 2006 | BNL6.32 | 6 | 0.5-0.5 cM | View Comparative Map | ||||
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Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 6 | 2.2-2.2 cM | View Comparative Map | ||||
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Species | Type | Name | Assoc. Type |
---|---|---|---|
Oryza sativa | QTL | AQGA003 | qtl_marker |
Oryza sativa | QTL | AQGA008 | qtl_marker |
Oryza sativa | QTL | AQGA022 | qtl_marker |
Oryza sativa | QTL | AQGA024 | qtl_marker |
Oryza sativa | QTL | AQGA026 | qtl_marker |
Oryza sativa | QTL | AQGA028 | qtl_marker |
Oryza sativa | QTL | AQHF031 | qtl_marker |
Oryza sativa Japonica Group | SSR | AUT19256 | equivalent_to |
Oryza sativa | QTL | CQAE17 | qtl_marker |
Oryza sativa Japonica Group | Primer | RM435_forward | primer_forward |
Oryza sativa Japonica Group | Primer | RM435_reverse | primer_reverse |
Oryza sativa Japonica Group | GSS | AQ287875 | contained_in_sequence |
Oryza sativa Japonica Group | GSS | AQ287875 | source_sequence |