ID | 11301 |
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Name | RM430 |
Synonyms (0) | None. |
Type | SSR |
Species | Oryza sativa Japonica Group (Oryza sativa japonica) [ GR_tax:013684 ] |
Germplasm | |
Description | |
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | RM430 |
Repeat Motif | (GA)25 |
Anneal Temperature | 55 |
Expected PCR Product Size | 173 |
Sequence Source | AQ272915 |
Linkage Group | |
Remarks |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 18,691,407-18,691,579 bp | View Comparative Map | |||
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BNL6.32 | Chr. 5 | 18,691,417-18,691,547 bp | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Genetic | Cornell SSR 2001 | BNL6.32 | 5 | 78.7-78.7 cM | View Comparative Map | |||
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QTL | CNHAU Zhenshan 97/IRAT109 SSR QTL 2006 | BNL6.32 | 5 | 59.1-59.1 cM | View Comparative Map | |||
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Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 5 | 78.7-78.7 cM | View Comparative Map | ||||
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Cornell IR64/IRG105 QTL 2003 | BNL6.32 | 5 | 116.8-116.8 cM | View Comparative Map | ||||
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JUT Akihi/IRAT109 QTL 2004 | BNL6.32 | 5 | 79.57-79.57 cM | View Comparative Map | ||||
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Species | Type | Name | Assoc. Type |
---|---|---|---|
Oryza sativa | QTL | AQEE015 | qtl_marker |
Oryza sativa | QTL | AQEE019 | qtl_marker |
Oryza sativa | QTL | AQEE035 | qtl_marker |
Oryza sativa | QTL | AQEE044 | qtl_marker |
Oryza sativa | QTL | AQEE046 | qtl_marker |
Oryza sativa | QTL | AQGP003 | qtl_marker |
Oryza sativa | QTL | AQGP063 | qtl_marker |
Oryza sativa | QTL | AQGP082 | qtl_marker |
Oryza sativa Japonica Group | SSR | AUT18585 | equivalent_to |
Oryza sativa Japonica Group | Primer | RM430_forward | primer_forward |
Oryza sativa Japonica Group | Primer | RM430_reverse | primer_reverse |
Oryza sativa Japonica Group | GSS | AQ272915 | contained_in_sequence |
Oryza sativa Japonica Group | GSS | AQ272915 | source_sequence |