ID | 11299 |
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Name | RM440 |
Synonyms (0) | None. |
Type | SSR |
Species | Oryza sativa Japonica Group (Oryza sativa japonica) [ GR_tax:013684 ] |
Germplasm | |
Description | |
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | RM440 |
Repeat Motif | (CTT)22 |
Anneal Temperature | 55 |
Expected PCR Product Size | 169 |
Sequence Source | AQ289202 |
Linkage Group | |
Remarks |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 19,912,517-19,912,685 bp | View Comparative Map | |||
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BNL6.32 | Chr. 5 | 19,912,523-19,912,722 bp | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Genetic | Cornell SSR 2001 | BNL6.32 | 5 | 92.7-92.7 cM | View Comparative Map | |||
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QTL | Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 5 | 92.7-92.7 cM | View Comparative Map | |||
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JUT Akihi/IRAT109 QTL 2004 | BNL6.32 | 5 | 90.23-90.23 cM | View Comparative Map | ||||
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JUT IR36/Genj QTL 2004 | BNL6.32 | 5 | 77.1-77.1 cM | View Comparative Map | ||||
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NDSU EM93/SS18 BC QTL 2004 | BNL6.32 | 5 | 87.3-87.3 cM | View Comparative Map | ||||
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Species | Type | Name | Assoc. Type |
---|---|---|---|
Oryza sativa | QTL | AQFD005 | qtl_marker |
Oryza sativa | QTL | AQFD012 | qtl_marker |
Oryza sativa | QTL | AQFD015 | qtl_marker |
Oryza sativa Japonica Group | SSR | AUT18655 | equivalent_to |
Oryza sativa Japonica Group | Primer | RM440_forward | primer_forward |
Oryza sativa Japonica Group | Primer | RM440_reverse | primer_reverse |
Oryza sativa Japonica Group | GSS | AQ289202 | contained_in_sequence |
Oryza sativa Japonica Group | GSS | AQ289202 | source_sequence |