ID | 11292 |
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Name | RM421 |
Synonyms (0) | None. |
Type | SSR |
Species | Oryza sativa Japonica Group (Oryza sativa japonica) [ GR_tax:013684 ] |
Germplasm | |
Description | |
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | RM421 |
Repeat Motif | (AGAT)6 |
Anneal Temperature | 55 |
Expected PCR Product Size | 234 |
Sequence Source | AQ255791 |
Linkage Group | |
Remarks |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 23,976,333-23,976,580 bp | View Comparative Map | |||
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BNL6.32 | Chr. 5 | 23,976,341-23,976,574 bp | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Genetic | Cornell SSR 2001 | BNL6.32 | 5 | 111.2-111.2 cM | View Comparative Map | |||
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IRMI 2003 | BNL6.32 | 5 | 101.5-101.5 cM | View Comparative Map | ||||
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QTL | CNHAU Zhenshan 97/IRAT109 SSR QTL 2006 | BNL6.32 | 5 | 85.6-85.6 cM | View Comparative Map | |||
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Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 5 | 111.2-111.2 cM | View Comparative Map | ||||
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Cornell IR64/IRG105 QTL 2003 | BNL6.32 | 5 | 137.2-137.2 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | USMSU O sativa CL16/O.nivara 80470 SSR QTL 2006 | BNL6.32 | 5 | 101.5-101.5 cM | View Comparative Map | |||
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Species | Type | Name | Assoc. Type |
---|---|---|---|
Oryza sativa | QTL | AQA032 | qtl_marker |
Oryza sativa | QTL | AQEE015 | qtl_marker |
Oryza sativa | QTL | AQEE019 | qtl_marker |
Oryza sativa | QTL | AQEE035 | qtl_marker |
Oryza sativa | QTL | AQEE044 | qtl_marker |
Oryza sativa | QTL | AQEE046 | qtl_marker |
Oryza sativa | QTL | AQGP055 | qtl_marker |
Oryza sativa | QTL | AQGP072 | qtl_marker |
Oryza sativa | QTL | AQHF004 | qtl_marker |
Oryza sativa | QTL | AQHF007 | qtl_marker |
Oryza sativa | QTL | AQHF011 | qtl_marker |
Oryza sativa | QTL | AQHF018 | qtl_marker |
Oryza sativa | QTL | AQHF033 | qtl_marker |
Oryza sativa Japonica Group | SSR | AUT18904 | equivalent_to |
Oryza sativa | QTL | CQAE10 | qtl_marker |
Oryza sativa Japonica Group | Primer | RM421_forward | primer_forward |
Oryza sativa Japonica Group | Primer | RM421_reverse | primer_reverse |
Oryza sativa Japonica Group | GSS | AQ255791 | contained_in_sequence |
Oryza sativa Japonica Group | GSS | AQ255791 | source_sequence |