ID | 11273 |
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Name | RM335 |
Synonyms (1) | CTT50 |
Type | SSR |
Species | Oryza sativa Indica Group (Oryza sativa indica) [ GR_tax:013682 ] |
Germplasm | |
Description | |
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | RM335 |
Repeat Motif | (CTT)25 |
Anneal Temperature | 55 |
Expected PCR Product Size | 104 |
Sequence Source | AF344159 |
Linkage Group | |
Remarks |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 688,353-688,466 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Genetic | Cornell SSR 2001 | BNL6.32 | 4 | 21.5-21.5 cM | View Comparative Map | |||
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IRMI 2003 | BNL6.32 | 4 | 5.4-5.4 cM | View Comparative Map | ||||
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QTL | CNHAU Zhenshan 97/IRAT109 SSR QTL 2006 | BNL6.32 | 4 | 0.8-0.8 cM | View Comparative Map | |||
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CNHZAU Zhe97/Wuy2 QTL 2004 | BNL6.32 | 4 | 0-0 cM | View Comparative Map | ||||
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CNWHU B5/Min63 QTL 2004 | BNL6.32 | 4 | 2.1-2.1 cM | View Comparative Map | ||||
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Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 4 | 21.5-21.5 cM | View Comparative Map | ||||
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IRRI IR622/IR600 QTL 2003 | BNL6.32 | 4 | 0-0 cM | View Comparative Map | ||||
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JHPRC Rei/Yamd QTL 2002 | BNL6.32 | 4 | 0-0 cM | View Comparative Map | ||||
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JNARC Noe29/Chu32 F3 QTL 2002 | BNL6.32 | 4a | 7.2-7.2 cM | View Comparative Map | ||||
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JUT Akihi/IRAT109 QTL 2004 | BNL6.32 | 4 | 4.01-4.01 cM | View Comparative Map | ||||
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M202/IR50 UCD QTL 2003 | BNL6.32 | 4 | 0-0 cM | View Comparative Map | ||||
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TKU Integrated QTL 2002 | BNL6.32 | 4 | 2-2 cM | View Comparative Map | ||||
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Species | Type | Name | Assoc. Type |
---|---|---|---|
Oryza sativa | QTL | AQDU008 | qtl_marker |
Oryza sativa | QTL | AQEI012 | qtl_marker |
Oryza sativa | QTL | AQEI035 | qtl_marker |
Oryza sativa | QTL | AQEI110 | qtl_marker |
Oryza sativa | QTL | AQFJ067 | qtl_marker |
Oryza sativa | QTL | AQGH012 | qtl_marker |
Oryza sativa | QTL | AQGH029 | qtl_marker |
Oryza sativa | QTL | AQT003 | qtl_marker |
Oryza sativa | QTL | CQAA8 | qtl_marker |
Oryza sativa Indica Group | Primer | RM335_forward | primer_forward |
Oryza sativa Indica Group | Primer | RM335_reverse | primer_reverse |
Oryza sativa Indica Group | Genomic DNA | AF344159 | contained_in_sequence |
Oryza sativa Indica Group | Genomic DNA | AF344159 | source_sequence |
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