ID | 11254 | ||
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Name | RM564 | ||
Synonyms (2) |
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Type | SSR | ||
Species | Oryza sativa Japonica Group (Oryza sativa japonica) [ GR_tax:013684 ] | ||
Germplasm | |||
Description | |||
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | RM564 |
Repeat Motif | (GT)14 |
Anneal Temperature | 55 |
Expected PCR Product Size | 228 |
Sequence Source | AQ914062 |
Linkage Group | |
Remarks |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 18,587,434-18,587,657 bp | View Comparative Map | |||
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BNL6.32 | Chr. 6 | 11,767,249-11,767,480 bp | View Comparative Map | |||||
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BNL6.32 | Chr. 6 | 11,817,100-11,817,351 bp | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell SSR 2001 | BNL6.32 | 4 | 73.1-73.1 cM | View Comparative Map | |||
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IRMI 2003 | BNL6.32 | 6 | 63.2-63.2 cM | View Comparative Map | ||||
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QTL | CNHAU Zhenshan 97/IRAT109 SSR QTL 2006 | BNL6.32 | 6 | 64.9-64.9 cM | View Comparative Map | |||
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Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 4 | 73.1-73.1 cM | View Comparative Map | ||||
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NDSU EM93/SS18 BC QTL 2004 | BNL6.32 | 4 | 71.1-71.1 cM | View Comparative Map | ||||
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BNL6.32 | 6 | 81.8-81.8 cM | View Comparative Map | |||||
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Species | Type | Name | Assoc. Type |
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Oryza sativa | QTL | AQA008 | qtl_marker |
Oryza sativa | QTL | AQFB001 | qtl_marker |
Oryza sativa | QTL | AQFB002 | qtl_marker |
Oryza sativa | QTL | AQFB003 | qtl_marker |
Oryza sativa | QTL | AQFB004 | qtl_marker |
Oryza sativa | QTL | AQG013 | qtl_marker |
Oryza sativa | QTL | AQGD001 | qtl_marker |
Oryza sativa | QTL | AQGD002 | qtl_marker |
Oryza sativa | QTL | AQGD003 | qtl_marker |
Oryza sativa | QTL | AQGD017 | qtl_marker |
Oryza sativa | QTL | AQGD020 | qtl_marker |
Oryza sativa | QTL | AQGD021 | qtl_marker |
Oryza sativa | QTL | AQGD023 | qtl_marker |
Oryza sativa | QTL | AQGD025 | qtl_marker |
Oryza sativa | QTL | AQGD027 | qtl_marker |
Oryza sativa | QTL | AQHF008 | qtl_marker |
Oryza sativa | QTL | CQAE9 | qtl_marker |
Oryza sativa | QTL | CQAP2 | qtl_marker |
Oryza sativa Japonica Group | Primer | RM564_forward | primer_forward |
Oryza sativa Japonica Group | Primer | RM564_reverse | primer_reverse |
Oryza sativa Japonica Group | GSS | AQ914062 | contained_in_sequence |
Oryza sativa Japonica Group | GSS | AQ914062 | source_sequence |