ID | 11153 |
---|---|
Name | RM154 |
Synonyms (1) | OSR11 |
Type | SSR |
Species | Oryza sativa (Oryza sativa) [ GR_tax:013681 ] |
Germplasm | |
Description | |
Tags () | None |
Marker Created: | |
---|---|
Marker Updated: | |
Internal Marker Accession: | RM154 |
Repeat Motif | (GA)21 |
Anneal Temperature | 61 |
Expected PCR Product Size | 183 |
Sequence Source | |
Linkage Group | |
Remarks |
Gramene Literature | Akagi-H, Yokozeki-Y, Inagaki-A, Fujimura-T, "Microsatellite DNA markers for rice chromosomes", Theoretical and applied genetics, 1996, vol. 93, pp. 1071-1077 |
---|---|
Gramene Diversity Rice Marker | 10 |
CATTGCTATTGCTTCGCTTGCGCTTGGCCACCCACCATTTCGGCGCGGAGAGGAGACCGCTTCACCCGCCGATCTGCGAG
AAACCCTCTCCGCCTCGCCTCCTCCACCTCCCAATCTTAACCCAACCTCCCCCCTTCCTCTCGCGTCGACCCCTTGCTTT
GCTCCTCCTTCAACCTTCTTCTTTCTTGGAGTTTCTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
GGGGGAGCGGTCGCAGGAGGAGGAGGACGGCGGCGTCTGCTGCGACCGACGGGGAGCGGCGAGGATGAGCGCGTCCAGGT
TCATAAAGTGCGTCA
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 1,083,820-1,084,090 bp | View Comparative Map | |||
|
||||||||
BNL6.32 | Chr. 2 | 1,083,895-1,084,077 bp | View Comparative Map | |||||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Genetic | Cornell SSR 2001 | BNL6.32 | 2 | 4.8-4.8 cM | View Comparative Map | |||
|
||||||||
QTL | CNHAU Zhen97/ H94 QTL 2005 | BNL6.32 | 2 | 0-0 cM | View Comparative Map | |||
|
||||||||
CNHAU Zhenshan 97/IRAT109 SSR QTL 2006 | BNL6.32 | 2 | 0-0 cM | View Comparative Map | ||||
|
||||||||
CNHZAU Zhe97/Wuy2 QTL 2004 | BNL6.32 | 2 | 13.8-13.8 cM | View Comparative Map | ||||
|
||||||||
CNNAU IR50/Tatsumimochi/Miyukimochi SSR QTL 2006 | BNL6.32 | 2 | 0-0 cM | View Comparative Map | ||||
|
||||||||
CNYU Bal/Nan//Bal BC1 QTL 2001 | BNL6.32 | 2 | 15.3-15.3 cM | View Comparative Map | ||||
|
||||||||
BNL6.32 | 2 | 15.31-15.31 cM | View Comparative Map | |||||
|
||||||||
Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 2 | 4.8-4.8 cM | View Comparative Map | ||||
|
||||||||
IRRI Lem/Teq RI QTL 2001 | BNL6.32 | 2 | 17.5-17.5 cM | View Comparative Map | ||||
|
||||||||
JUT Akihi/IRAT109 QTL 2004 | BNL6.32 | 2 | 0-0 cM | View Comparative Map | ||||
|
||||||||
M202/IR50 UCD QTL 2003 | BNL6.32 | 2 | 4.5-4.5 cM | View Comparative Map | ||||
|
||||||||
TKU Integrated QTL 2002 | BNL6.32 | 2 | 0-0 cM | View Comparative Map | ||||
|
||||||||
BNL6.32 | 2 | 1.6-1.6 cM | View Comparative Map | |||||
|
Species | Type | Name | Assoc. Type |
---|---|---|---|
Oryza sativa | QTL | AQCE034 | qtl_marker |
Oryza sativa | QTL | AQCU062 | qtl_marker |
Oryza sativa | QTL | AQEI033 | qtl_marker |
Oryza sativa | QTL | AQEI085 | qtl_marker |
Oryza sativa | QTL | AQFJ040 | qtl_marker |
Oryza sativa | QTL | AQFJ064 | qtl_marker |
Oryza sativa | QTL | AQGM009 | qtl_marker |
Oryza sativa Japonica Group | SSR | AUT12355 | equivalent_to |
Oryza sativa Japonica Group | EST | D39059 | contained_in_sequence |
|