ID | 11006 |
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Name | RM332 |
Synonyms (1) | CTT38 |
Type | SSR |
Species | Oryza sativa Indica Group (Oryza sativa indica) [ GR_tax:013682 ] |
Germplasm | |
Description | |
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | RM332 |
Repeat Motif | (CTT)5-12-(CTT)14 |
Anneal Temperature | 55 |
Expected PCR Product Size | 183 |
Sequence Source | AF344156 |
Linkage Group | |
Remarks |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 11 | 2,840,211-2,840,381 bp | View Comparative Map | |||
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BNL6.32 | Chr. 11 | 2,840,213-2,840,362 bp | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | CIAT SSR 2006 | BNL6.32 | 11 | 12.3-12.3 cM | View Comparative Map | |||
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Cornell SSR 2001 | BNL6.32 | 11 | 27.9-27.9 cM | View Comparative Map | ||||
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QTL | CNHAU Zhen97/ H94 QTL 2005 | BNL6.32 | 11 | 15.5-15.5 cM | View Comparative Map | |||
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CNHAU Zhenshan 97/IRAT109 SSR QTL 2006 | BNL6.32 | 11 | 13-13 cM | View Comparative Map | ||||
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CNNAU IR50/Tatsumimochi/Miyukimochi SSR QTL 2006 | BNL6.32 | 11 | 32.6-32.6 cM | View Comparative Map | ||||
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Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 11 | 27.9-27.9 cM | View Comparative Map | ||||
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JHPRC Rei/Yamd QTL 2002 | BNL6.32 | 11 | 0-0 cM | View Comparative Map | ||||
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JUT Akihi/IRAT109 QTL 2004 | BNL6.32 | 11 | 17.37-17.37 cM | View Comparative Map | ||||
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M202/IR50 UCD QTL 2003 | BNL6.32 | 11 | 11.7-11.7 cM | View Comparative Map | ||||
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NDSU EM93/SS18 BC QTL 2004 | BNL6.32 | 11 | 15.9-15.9 cM | View Comparative Map | ||||
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TKU Integrated QTL 2002 | BNL6.32 | 11 | 23.4-23.4 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | USMSU O sativa CL16/O.nivara 80470 SSR QTL 2006 | BNL6.32 | 11 | 14-14 cM | View Comparative Map | |||
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Species | Type | Name | Assoc. Type |
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Oryza sativa | QTL | AQDU004 | qtl_marker |
Oryza sativa | QTL | AQFQ005 | qtl_marker |
Oryza sativa | QTL | AQGA033 | qtl_marker |
Oryza sativa | QTL | AQGA041 | qtl_marker |
Oryza sativa | QTL | AQGP017 | qtl_marker |
Oryza sativa | QTL | AQGP066 | qtl_marker |
Oryza sativa | QTL | AQGP077 | qtl_marker |
Oryza sativa | QTL | AQT012 | qtl_marker |
Oryza sativa | QTL | AQT016 | qtl_marker |
Oryza sativa | QTL | AQT030 | qtl_marker |
Oryza sativa Japonica Group | SSR | AUT26106 | equivalent_to |
Oryza sativa | QTL | CQAA4 | qtl_marker |
Oryza sativa Indica Group | Primer | RM332_forward | primer_forward |
Oryza sativa Indica Group | Primer | RM332_reverse | primer_reverse |
Oryza sativa Indica Group | Genomic DNA | AF344156 | contained_in_sequence |
Oryza sativa Indica Group | Genomic DNA | AF344156 | source_sequence |
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