ID | 10942 |
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Name | RM160 |
Synonyms (1) | OSR29 |
Type | SSR |
Species | Oryza sativa (Oryza sativa) [ GR_tax:013681 ] |
Germplasm | |
Description | |
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | RM160 |
Repeat Motif | (GAA)23 |
Anneal Temperature | 55 |
Expected PCR Product Size | 131 |
Sequence Source | |
Linkage Group | |
Remarks |
Gramene Literature | Akagi-H, Yokozeki-Y, Inagaki-A, Fujimura-T, "Microsatellite DNA markers for rice chromosomes", Theoretical and applied genetics, 1996, vol. 93, pp. 1071-1077 |
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Gramene Diversity Rice Marker | 228 |
TTCTCAGCGAGCTAGCAGCTATAGCTTAGCTGGAGATCGATCGAGAGGTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAGGCCTCGCATGGCGATGAGAGCTCGCATCTGGTAGCCAAG
GATGACTTGCCTGTGTCTCTGCTCATGTGCAGTAGAAGAAGATGCATTTCTAGCTGCTTTCTGCATATGTGATCTCACAG
GCAGTCTCCTTGGCTAGCCTGAGCGGCTCTCATCCTTCATGCCTGGCTCATCTCTTCTTAATGATCTCTTATTAGTCACA
GATCCTGTAGAGATTAGTTGATGTTTGATGCTTGTCCACTTCAGTGCCACACATAAACATAGCGGCCGTGATCAACTGAT
CAGTCCAGCCTGA
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 9 | 19,788,222-19,788,404 bp | View Comparative Map | |||
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BNL6.32 | Chr. 9 | 19,788,225-19,788,417 bp | View Comparative Map | |||||
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BNL6.32 | Chr. 9 | 19,788,247-19,788,377 bp | View Comparative Map | |||||
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BNL6.32 | Chr. 9 | 19,788,251-19,788,417 bp | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | CIAT SSR 2006 | BNL6.32 | 9 | 88.3-88.3 cM | View Comparative Map | |||
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Cornell SSR 2001 | BNL6.32 | 9 | 82.4-85.4 cM | View Comparative Map | ||||
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IRMI 2003 | BNL6.32 | 9 | 77.2-77.2 cM | View Comparative Map | ||||
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QTL | CAU IRAT109/YUEFU QTL 2004 | BNL6.32 | 9 | 17.8-17.8 cM | View Comparative Map | |||
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CNHAU Zhen97/ H94 QTL 2005 | BNL6.32 | 9 | 90.1-90.1 cM | View Comparative Map | ||||
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CNHAU Zhenshan 97/IRAT109 SSR QTL 2006 | BNL6.32 | 9 | 61.3-61.3 cM | View Comparative Map | ||||
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CNNAU IR50/Tatsumimochi/Miyukimochi SSR QTL 2006 | BNL6.32 | 9 | 72-72 cM | View Comparative Map | ||||
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CNYU Bal/Nan//Bal BC1 QTL 2001 | BNL6.32 | 9b | 6.71-6.71 cM | View Comparative Map | ||||
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BNL6.32 | 9b | 6.72-6.72 cM | View Comparative Map | |||||
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Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 9 | 82.4-82.4 cM | View Comparative Map | ||||
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TKU Integrated QTL 2002 | BNL6.32 | 9 | 78.2-78.2 cM | View Comparative Map | ||||
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Species | Type | Name | Assoc. Type |
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Oryza sativa | QTL | AQGA014 | qtl_marker |
Oryza sativa | QTL | AQGH011 | qtl_marker |
Oryza sativa | QTL | AQGH028 | qtl_marker |
Oryza sativa | QTL | AQGP021 | qtl_marker |
Oryza sativa | QTL | AQHF023 | qtl_marker |
Oryza sativa | QTL | AQHF042 | qtl_marker |
Oryza sativa Japonica Group | SSR | AUT24631 | equivalent_to |
Oryza sativa Japonica Group | SSR | MRG4786.ARS4786 | equivalent_to |
Oryza sativa Japonica Group | SSR | MRG4786.RGP4786 | equivalent_to |
Oryza sativa Japonica Group | EST | D40093 | contained_in_sequence |
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