ID | 10816 |
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Name | RM169 |
Synonyms (0) | None. |
Type | SSR |
Species | Oryza sativa Japonica Group (Oryza sativa japonica) [ GR_tax:013684 ] |
Germplasm | |
Description | |
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | RM169 |
Repeat Motif | (GA)12 |
Anneal Temperature | 67 |
Expected PCR Product Size | 167 |
Sequence Source | D48964 |
Linkage Group | |
Remarks |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 7,497,918-7,498,084 bp | View Comparative Map | |||
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BNL6.32 | Chr. 5 | 7,497,973-7,498,116 bp | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | CIAT SSR 2006 | BNL6.32 | 5 | 34.7-34.7 cM | View Comparative Map | |||
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Cornell SSR 2001 | BNL6.32 | 5 | 57.9-57.9 cM | View Comparative Map | ||||
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IRMI 2003 | BNL6.32 | 5 | 48.3-48.3 cM | View Comparative Map | ||||
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QTL | CNHAU Zhen97/ H94 QTL 2005 | BNL6.32 | 5 | 83.7-83.7 cM | View Comparative Map | |||
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CNHZAU Zhe97/Wuy2 QTL 2004 | BNL6.32 | 5 | 62.7-62.7 cM | View Comparative Map | ||||
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CNNAU IR50/Tatsumimochi/Miyukimochi SSR QTL 2006 | BNL6.32 | 5 | 53.7-53.7 cM | View Comparative Map | ||||
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Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 5 | 57.9-57.9 cM | View Comparative Map | ||||
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Cornell IR64/IRG105 QTL 2003 | BNL6.32 | 5 | 77.1-77.1 cM | View Comparative Map | ||||
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Cornell Jef/Oruf BC QTL 2003 | BNL6.32 | 5 | 47.1-47.1 cM | View Comparative Map | ||||
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INDIR IR58025/O. rufipogon BC SSR QTL 2005 | BNL6.32 | 5 | 62.6-62.6 cM | View Comparative Map | ||||
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LSU Caiapo/IRGC103544 QTL 2004 | BNL6.32 | 5 | 30-30 cM | View Comparative Map | ||||
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M202/IR50 UCD QTL 2003 | BNL6.32 | 5 | 55.5-55.5 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | USMSU O sativa CL16/O.nivara 80470 SSR QTL 2006 | BNL6.32 | 5 | 48.3-48.3 cM | View Comparative Map | |||
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Species | Type | Name | Assoc. Type |
---|---|---|---|
Oryza sativa | QTL | AQEI079 | qtl_marker |
Oryza sativa | QTL | AQEI111 | qtl_marker |
Oryza sativa | QTL | AQGH005 | qtl_marker |
Oryza sativa | QTL | AQGH013 | qtl_marker |
Oryza sativa | QTL | AQGH022 | qtl_marker |
Oryza sativa | QTL | AQGH030 | qtl_marker |
Oryza sativa | QTL | AQGS005 | qtl_marker |
Oryza sativa | QTL | AQGS009 | qtl_marker |
Oryza sativa | QTL | AQGS013 | qtl_marker |
Oryza sativa | QTL | AQGS014 | qtl_marker |
Oryza sativa | QTL | AQGS018 | qtl_marker |
Oryza sativa | QTL | AQGS022 | qtl_marker |
Oryza sativa | QTL | AQGS045 | qtl_marker |
Oryza sativa | QTL | AQGS051 | qtl_marker |
Oryza sativa Japonica Group | SSR | AUT18130 | equivalent_to |
Oryza sativa Japonica Group | Primer | RM169_forward | primer_forward |
Oryza sativa Japonica Group | Primer | RM169_reverse | primer_reverse |
Oryza sativa Japonica Group | EST | D48964 | contained_in_sequence |
Oryza sativa Japonica Group | EST | D48964 | source_sequence |
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