ID | 10714 |
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Name | RM555 |
Synonyms (0) | None. |
Type | SSR |
Species | Oryza sativa Japonica Group (Oryza sativa japonica) [ GR_tax:013684 ] |
Germplasm | |
Description | |
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | RM555 |
Repeat Motif | (AG)11 |
Anneal Temperature | 55 |
Expected PCR Product Size | 223 |
Sequence Source | AQ871818 |
Linkage Group | |
Remarks |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 4,305,685-4,305,907 bp | View Comparative Map | |||
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BNL6.32 | Chr. 2 | 4,305,749-4,305,907 bp | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Genetic | CIAT SSR 2006 | BNL6.32 | 2 | 20.3-20.3 cM | View Comparative Map | |||
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Cornell SSR 2001 | BNL6.32 | 2 | 34.7-34.7 cM | View Comparative Map | ||||
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QTL | CNHAU Zhenshan 97/IRAT109 SSR QTL 2006 | BNL6.32 | 2 | 22.3-22.3 cM | View Comparative Map | |||
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CNHZAU Zhe97/Wuy2 QTL 2004 | BNL6.32 | 2 | 59.8-59.8 cM | View Comparative Map | ||||
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CNNAU IR50/Tatsumimochi/Miyukimochi SSR QTL 2006 | BNL6.32 | 2 | 40.2-40.2 cM | View Comparative Map | ||||
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Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 2 | 34.7-34.7 cM | View Comparative Map | ||||
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Cornell IR64/IRG105 QTL 2003 | BNL6.32 | 2 | 33.3-33.3 cM | View Comparative Map | ||||
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Species | Type | Name | Assoc. Type |
---|---|---|---|
Oryza sativa | QTL | AQED001 | qtl_marker |
Oryza sativa | QTL | AQED063 | qtl_marker |
Oryza sativa | QTL | AQEE031 | qtl_marker |
Oryza sativa | QTL | AQEI114 | qtl_marker |
Oryza sativa | QTL | AQGP037 | qtl_marker |
Oryza sativa | QTL | AQGP069 | qtl_marker |
Oryza sativa Japonica Group | SSR | AUT12571 | equivalent_to |
Oryza sativa Japonica Group | Primer | RM555_forward | primer_forward |
Oryza sativa Japonica Group | Primer | RM555_reverse | primer_reverse |
Oryza sativa Japonica Group | GSS | AQ871818 | contained_in_sequence |
Oryza sativa Japonica Group | GSS | AQ871818 | source_sequence |