ID | 10671 |
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Name | RM493 |
Synonyms (0) | None. |
Type | SSR |
Species | Oryza sativa Japonica Group (Oryza sativa japonica) [ GR_tax:013684 ] |
Germplasm | |
Description | |
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | RM493 |
Repeat Motif | (CTT)9 |
Anneal Temperature | 55 |
Expected PCR Product Size | 211 |
Sequence Source | AQ579520 |
Linkage Group | |
Remarks |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 12,280,117-12,280,294 bp | View Comparative Map | |||
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BNL6.32 | Chr. 1 | 12,280,117-12,280,327 bp | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Genetic | CIAT SSR 2006 | BNL6.32 | 1 | 60-60 cM | View Comparative Map | |||
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Cornell SSR 2001 | BNL6.32 | 1 | 79.7-79.7 cM | View Comparative Map | ||||
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IRMI 2003 | BNL6.32 | 1 | 64.9-64.9 cM | View Comparative Map | ||||
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QTL | CNHAU Zhenshan 97/IRAT109 SSR QTL 2006 | BNL6.32 | 1 | 94.8-94.8 cM | View Comparative Map | |||
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Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 1 | 79.7-79.7 cM | View Comparative Map | ||||
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Cornell IR64/IRG105 QTL 2003 | BNL6.32 | 1 | 99.6-99.6 cM | View Comparative Map | ||||
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JUT IR36/Genj QTL 2004 | BNL6.32 | 1 | 79.3-79.3 cM | View Comparative Map | ||||
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NDSU EM93/SS18 BC QTL 2004 | BNL6.32 | 1 | 97.7-97.7 cM | View Comparative Map | ||||
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Species | Type | Name | Assoc. Type |
---|---|---|---|
Oryza sativa | QTL | AQA044 | qtl_marker |
Oryza sativa | QTL | AQED048 | qtl_marker |
Oryza sativa | QTL | AQED061 | qtl_marker |
Oryza sativa | QTL | AQEE016 | qtl_marker |
Oryza sativa Japonica Group | SSR | AUT10777 | equivalent_to |
Oryza sativa Japonica Group | Primer | RM493_forward | primer_forward |
Oryza sativa Japonica Group | Primer | RM493_reverse | primer_reverse |
Oryza sativa Japonica Group | GSS | AQ579520 | contained_in_sequence |
Oryza sativa Japonica Group | GSS | AQ579520 | source_sequence |