Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||||||||||||
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Accession | GR:0101312 | ||||||||||||||||||||
Gene Symbol | GGPR3 | ||||||||||||||||||||
Gene Name | geranylgeranyl-diphosphate synthase 3 | ||||||||||||||||||||
Synonyms (17) |
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E.C. Numbers (1) | 2.5.1.29 | ||||||||||||||||||||
Pathway Reactions (1) | Farnesyltranstransferase | ||||||||||||||||||||
Chromosome No. | 2 | ||||||||||||||||||||
Gene Type | CDS (Protein coding) | ||||||||||||||||||||
Has Phenotype | no | ||||||||||||||||||||
Description | The gene encodes for the enzyme geranylgeranyl-diphosphate synthase. It catalyzes the first step of the diterpene phytoalexin pathway by converting trans,trans-farnesyl diphosphate + isopentenyl diphosphate into diphosphate + geranylgeranyl diphosphate. |
Protein |
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Nucleotide (DNA) |
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 27,114,693-27,118,593bp | View Comparative Map | |||
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Map Position [ View in Marker DB ] | |||||
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# | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
1 | Rice japonica MSU6 | Chr. 2 | 27114693 bp | 27118593 bp | grjp2009a-2-GR:0101312 |
Cellular Component | plastid (GO:0009536) |
Molecular Function | farnesyltranstransferase activity (GO:0004311) |
Biological Process | isoprenoid biosynthetic process (GO:0008299), diterpene phytoalexin metabolic process (GO:0051501) |
Environment | abscisic acid regimen (EO:0007105), unknown environment (EO:0007403) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
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chr2 | 27,114,693 | 27,118,593 | ~160K SNPs x 20 accessions (McNally 2... | 2 | Search for SNPs |
chr2 | 27,114,693 | 27,118,593 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr2 | 27,114,693 | 27,118,593 | Huang X, et al, Nat Genetics 2010 Nov... | 3 | Search for SNPs |
chr2 | 27,114,693 | 27,118,593 | RiceDiversity 44K SNP assay, 34 trait... | 3 | Search for SNPs |
chr2 | 27,114,693 | 27,118,593 | RiceDiversity 44K SNP assay, 34 trait... | 0 |