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Release Notes
Browse Ontology Database by:
Trait
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Plant Structure
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Growth Stage
Find:
In:
Gene Symbol & Name
Gene Accession
Chromosome No.
TO:Trait
PO:Plant Structure
PO:Plant Growth and Development Stage
GRO:Cereal Plant Growth Stage
GO:Cellular Component
GO:Molecular Function
GO:Biological Process
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GenBank Accession
Gramene Protein Accession
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Type:
Not sequenced
CDS (Protein coding)
rRNA (Ribosomal RNA)
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With Phenotype
E.g.,
d1
,
dwarf-1
,
GR:0060184
,
flower*
,
*tillering stage*
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Oryza sativa gene "rps3" (GR:0100155)
Species
Oryza sativa (Rice)
[
GR_tax:013681
]
Accession
GR:0100155
Gene Symbol
rps3
Gene Name
Ribosomal protein S3
Synonyms (2)
Mitochondrial ribosomal protein S3
LOC_Osm1g00260
E.C. Numbers (0)
Pathway Reactions (2)
Protein-synthesizing GTPase
Protein-synthesizing GTPase
Chromosome No.
mitochondrion
Gene Type
CDS (Protein coding)
Has Phenotype
no
Description
Encodes a mitochondrial ribosomal protein S3, a constituent of the small subunit of the ribosomal complex.
Alleles (1)
rps3
Germplasm (1)
Nipponbare
Sequences (3)
Protein
Gramene Protein:
P46773
,
Q7JAJ0
Nucleotide (DNA)
Rice Ensembl Gene:
LOC_Osm1g00260
Gene-To-Gene Interactions (0)
Gene Interactions (0)
Map Positions (0)
Gene Map Positions (1)
Map Position
[ View in Marker DB ]
#
Map Set Name
Linkage Group
Start Position
Stop Position
CMap Feature Acc
1
Rice japonica MSU6
Chr. Mt
170836 bp
174298 bp
grjp2009a-Mt-GR:0100155
Associated Ontologies (10)
Cellular Component
intracellular
(GO:0005622)
, mitochondrion
(GO:0005739)
, mitochondrial small ribosomal subunit
(GO:0005763)
, ribosome
(GO:0005840)
Molecular Function
structural constituent of ribosome
(GO:0003735)
Biological Process
translation
(GO:0006412)
Environment
abscisic acid regimen
(EO:0007105)
, cold temperature regimen
(EO:0007174)
, tissue culture growth media
(EO:0007266)
, unknown environment
(EO:0007403)
Associated QTL (0)
Database Cross-References (0)
Literature (3)
Itadani-H, Wakasugi-T, Sugita-M, Sugiura-M, Nakazono-M, Hirai-A., "Nucleotide sequence of a 28-kbp portion of rice mitochondrial DNA: the existence of many sequences that correspond to parts of mitochondrial genes in intergenic regions",
Plant & cell physiology
, 1994, vol. 35, pp. 1239-1244
Nakazono-M, Itadani-H, Wakasugi-T, Tsutsumi-N, Sugiura-M, Hirai-A., "The rps3-rpl16-nad3-rps12 gene cluster in rice mitochondrial DNA is transcribed from alternative promoters",
Current genetics
, 1995, vol. 27, pp. 184-189
Notsu-Y, Masood-S, Nishikawa-T, Kubo-N, Akiduki-G, Nakazono-M, Hirai-A, Kadowaki-K., "The complete sequence of the rice ( Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants",
Mol Genet Genomics
, 2002, vol. 268, pp. 434-445
Images (0)
SNPs (0)