Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||
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Accession | GR:0080011 | ||
Gene Symbol | nop | ||
Gene Name | no pollen | ||
Synonyms (2) |
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E.C. Numbers (0) | |||
Pathway Reactions (0) | |||
Chromosome No. | 6 | ||
Gene Type | CDS (Protein coding) | ||
Has Phenotype | yes | ||
Description | Osnop gene is only expressed in late stage of pollen development. The sequence contains a C2-GRAM domain, it may cross-link both calcium and phosphoinositide signaling pathway. The Osnop mutant shows pollen-less phenotype at the flowering stage. |
Protein |
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Nucleotide (DNA) |
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 24,185,968-24,191,936bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | JRGP RFLP 2000 | BNL6.32 | 6 | 87.5-90.5cM | View Comparative Map | |||
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Map Position [ View in Marker DB ] | |||||
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# | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
1 | JRGP RFLP 2000 | 6 | 87.5 cM | 90.5 cM | jrgp-rflp-2000-6_GR:0080011 |
2 | Rice japonica MSU6 | Chr. 6 | 24185968 bp | 24191936 bp | grjp2009a-6-GR:0080011 |
Trait | pollen free (TO:0000245), grain yield trait (TO:0000396) |
Plant Structure | pollen tube (PO:0006345), PO:0006442 (PO:0006442) |
Cereal Plant Growth Stage | panicle stage PA7 (GRO:0007198), stamen stage ST6-5 (GRO:0007230) |
Cellular Component | mitochondrion (GO:0005739) |
Biological Process | pollen maturation (GO:0010152), calcium-mediated signaling (GO:0019722), phosphatidylinositol-mediated signaling (GO:0048015) |
Environment | green house study (EO:0007248), laboratory study (EO:0007255), watering regimen (EO:0007383), unknown environment (EO:0007403) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
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chr6 | 24,185,968 | 24,191,936 | ~160K SNPs x 20 accessions (McNally 2... | 13 | Search for SNPs |
chr6 | 24,185,968 | 24,191,936 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr6 | 24,185,968 | 24,191,936 | Huang X, et al, Nat Genetics 2010 Nov... | 20 | Search for SNPs |
chr6 | 24,185,968 | 24,191,936 | RiceDiversity 44K SNP assay, 34 trait... | 20 | Search for SNPs |
chr6 | 24,185,968 | 24,191,936 | RiceDiversity 44K SNP assay, 34 trait... | 2 | Search for SNPs |