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Release Notes
Browse Ontology Database by:
Trait
|
Plant Structure
|
Growth Stage
Find:
In:
Gene Symbol & Name
Gene Accession
Chromosome No.
TO:Trait
PO:Plant Structure
PO:Plant Growth and Development Stage
GRO:Cereal Plant Growth Stage
GO:Cellular Component
GO:Molecular Function
GO:Biological Process
EO:Environment
GenBank Accession
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Type:
Not sequenced
CDS (Protein coding)
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Aegilops
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All Species
With Phenotype
E.g.,
d1
,
dwarf-1
,
GR:0060184
,
flower*
,
*tillering stage*
Or
view help
Oryza sativa gene "SPL5" (GR:0060906)
Species
Oryza sativa (Rice)
[
GR_tax:013681
]
Accession
GR:0060906
Gene Symbol
SPL5
Gene Name
SPOTTED LEAF 5
Synonyms (7)
bl6
spl5
spotted leaf-5
lrd11
lesion resembling disease-11
lrd11
lesion resembling disease-11
E.C. Numbers (0)
Pathway Reactions (0)
Chromosome No.
7
Gene Type
Not sequenced
Has Phenotype
yes
Description
Relatively small reddish brown spots scattered extensively on leaves, from tillering to heading.
Alleles (1)
lrd11.1
Germplasm (1)
M 87
Sequences (0)
Gene-To-Gene Interactions (0)
Gene Interactions (0)
Map Positions (2)
Oryza sativa (2)
Map Type
Map Set
Name
Map
Position
Ext. Links
Genetic
Hokkaido Morphological 2000
BNL6.32
7
31-31cM
View Comparative Map
Details
Date Created
Mapping Method:
Comments
CMap Preview
JRGP RFLP 2000
BNL6.32
7
0.8-0.8cM
View Comparative Map
Details
Date Created
Mapping Method:
Comments
CMap Preview
Gene Map Positions (2)
Map Position
[ View in Marker DB ]
#
Map Set Name
Linkage Group
Start Position
Stop Position
CMap Feature Acc
1
Hokkaido Morphological 2000
7
31 cM
31 cM
morph-2000-7-5
2
JRGP RFLP 2000
7
0.8 cM
0.8 cM
jrgp-2000-7-ip28
Associated Ontologies (13)
Trait
mimic response
(TO:0000063)
Plant Structure
vascular leaf
(PO:0009025)
Plant Growth and Development Stage
booting stage
(PO:0007014)
, inflorescence emergence stage
(PO:0007041)
, LP.05 five leaves visible stage
(PO:0007065)
, 2 formation of axillary shoot stage
(PO:0007073)
, stem elongation stage
(PO:0007089)
, LP.06 six leaves visible stage
(PO:0007123)
Cereal Plant Growth Stage
06-heading stage
(GRO:0007044)
, 04-stem elongation stage
(GRO:0007048)
, 03-tillering stage
(GRO:0007049)
, 05-booting stage
(GRO:0007148)
Biological Process
biological_process
(GO:0008150)
Associated QTL (0)
Database Cross-References (1)
Oryzabase:
812
Literature (10)
Iwata-N, Omura-T., "Linkage studies in rice (Oryza sativa L) On some mutants derived from chronic gamma irradiation",
J Fac Agr Kyushu Univ
, 1977, vol. 21, pp. 117-127
Iwata-N, Omura-T, Satoh-H., "Linkage studies in rice (Oryza sativa L) On some mutants for physiological leaf spots",
J Fac Agr Kyushu Univ
, 1978, vol. 22, pp. 243-251
Iwata-N, Satoh-H, Omura-T., "Linkage analysis by use of trisomics in rice (Oryza sativa L) IV Linkage groups locating on chromosomes 2 and 10",
Japan J Breed
, 1981, vol. 31(Suppl 1), pp. 66-67
Satoh-H, Iwata-N., "Linkage analysis in rice. On three mutant loci for endosperm properties, ge(giant embryo), du-4(dull endosperm-4) and flo-1(floury endosperm-1)",
Japan J Breed
, 1990, vol. 40(Suppl. 2), pp. 268-269
Ideta-O, Yoshimura-A, Ashikari-M, Iwata-N., "Integration of conventional and RFLP linkage maps in rice. III. Choromosomes 5, 7, 8 and 12",
RGN
, 1994, vol. 11, pp. 116-117
Yoshimura-A, Ideta-O, Iwata-N., "Linkage map of phenotype and RFLP markers in rice",
Plant molecular biology
, 1997, vol. 35, pp. 49-60
Sanchez-A-C, Khush-G-S., "Inheritance and linkage relationships of twenty-one genes in rice, Oryza sativa. L",
SABRAO J
, 1998, vol. 30(2):, pp. 51-60
Yin-Z, Chen-J, Zeng-L, Goh-M, Leung-H, Khush-G-S, Wang-G-L., "Characterizing rice lesion mimic mutants and identifying a mutant with broad-spectrum resistance to rice blast and bacterial blight",
Molecular plant-microbe interactions : MPMI
, 2000, vol. 13, pp. 869-876
Mizobuchi-R, Hirabayashi-H, Kaji-R, Nishizawa-Y, Yoshimura-A, Satoh-H, Ogawa-T, Okamoto-M., "Isolation and characterization of rice lesion-mimic mutants with enhanced resistance to rice blast and bacterial blight",
Plant Sci.
, 2002, vol. 163(2), pp. 345-353
Mizobuchi-K, Hirabayashi-H, Kaji-R, Nishizawa-Y, Satoh-H, Ogawa-T, Okamoto-M., "Developmental responses of resistance to Magnaporthe grisea and Xanthomonas campestris pv. oryzae in lesion-mimic mutants of rice",
Breeding Science
, 2003, vol. 53, pp. 93-100
Images (2)
1.
1. Brown leaf spots (on right). (Photo courtesy A. Yoshimura)
2.
2. Brown colored leaf spots (on right).
SNPs (0)