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Browse Ontology Database by:
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Find:
In:
Gene Symbol & Name
Gene Accession
Chromosome No.
TO:Trait
PO:Plant Structure
PO:Plant Growth and Development Stage
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E.g.,
d1
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GR:0060184
,
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Oryza sativa gene "SH4" (GR:0060876)
Species
Oryza sativa (Rice)
[
GR_tax:013681
]
Accession
GR:0060876
Gene Symbol
SH4
Gene Name
SHATTERING
Synonyms (5)
sh3
sh4
shattering-4
sh4
shattering-4
E.C. Numbers (0)
Pathway Reactions (0)
Gene Type
Not sequenced
Has Phenotype
yes
Description
High rate of seed shattering. A clear abscission layer at the base of sterile glumes in the spikelet developed.
Alleles (0)
Germplasm (0)
Sequences (0)
Gene-To-Gene Interactions (0)
Gene Interactions (0)
Map Positions (2)
Oryza sativa (2)
Map Type
Map Set
Name
Map
Position
Ext. Links
Genetic
JRGP RFLP 2000
BNL6.32
3
99.6-120.1cM
View Comparative Map
Details
Date Created
Mapping Method:
Comments
CMap Preview
QTL
JHNAES Din/SR-5 QTL 1998
BNL6.32
3
44-44cM
View Comparative Map
Details
Date Created
Mapping Method:
Comments
CMap Preview
Gene Map Positions (2)
Map Position
[ View in Marker DB ]
#
Map Set Name
Linkage Group
Start Position
Stop Position
CMap Feature Acc
1
JRGP RFLP 2000
3
99.6 cM
120.1 cM
jrgp-2000-3-ip39
2
JHNAES Din/SR-5 QTL 1998
3
44 cM
44 cM
fuy1998a-3
Associated Ontologies (4)
Trait
grain shattering
(TO:0000473)
Plant Structure
seed
(PO:0009010)
Plant Growth and Development Stage
whole plant fruit ripening complete stage
(PO:0007038)
Biological Process
cell wall modification involved in abscission
(GO:0009830)
Associated QTL (0)
Database Cross-References (1)
Oryzabase:
538
Literature (7)
Fukuta-Y, Yano-M, Kobayashi-A., "Genetic analysis of shattering-resistant mutant lines induced from an indica rice (Oryza sativa L.) variety, Nan-jing 11",
Breed Sci
, 1994, vol. 44, pp. 325-331
Fukuta-Y, Yoshida-H, Fukui-K, Kobayashi-A., "Analysis of shattering degree and abscission layer development in shattering-resistant mutant lines induced from an indica rice (Oryza sativa L.) variety, Nan-jing 11",
Breed Sci
, 1994, vol. 44, pp. 195-200
Fukuta-Y., "RFLP mapping of a shattering-resistance gene in the mutant line, SR-1 induced from an indica rice variety, Nan-jing 11",
Breed Sci
, 1995, vol. 45, pp. 15-19
Fukuta-Y., "Genetic and breeding analysis of shattering habit using the resistant mutant lines in rice (Oryza sativa L.)",
Bull. Hokuriku National Agricultural Experiment Station.
, 1995, vol. No.37, pp. 67-105
Fukuta-Y., "Genetic analysis of shattering-resistance mutant lines induced from an indica rice variety, Nan-jing 11.4.RFLP mapping of mutant gene in Hokuriku 143(SR-5)",
Breed Sci
, 1995, vol. 45(Suppl.1), pp. 89-89
Fukuta-Y, Tamura-K, Hirae-M, Oya-S., "Genetic analysis of resistance to green rice leafhopper (Nephotettix cincticeps UHLER) in rice parental line, norin-PL6, using RFLP markers",
Breed Sci
, 1998, vol. 48, pp. 243-249
Fukuta-Y, Yagi-T., "Mapping of a shattering resistance gene in a mutant line SR-5 induced from an indica rice variety, Nan-jing11",
Breed Sci
, 1998, vol. 48, pp. 345-348
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