Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||||||||
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Accession | GR:0060297 | ||||||||||||||||
Gene Symbol | EPSPS1 | ||||||||||||||||
Gene Name | 5-Enolpyruvylshikimate-3-phosphate synthase 1 | ||||||||||||||||
Synonyms (13) |
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E.C. Numbers (1) | 2.5.1.19 | ||||||||||||||||
Pathway Reactions (1) | 3-phosphoshikimate 1-carboxyvinyltransferase | ||||||||||||||||
Chromosome No. | 6 | ||||||||||||||||
Gene Type | CDS (Protein coding) | ||||||||||||||||
Has Phenotype | yes | ||||||||||||||||
Description | The gene encodes for the enzyme, 5-Enolpyruvylshikimate-3-phosphate (EPSP) synthase that catalyzes the reversible addition of the enolpyruvyl moiety of phosphoenolpyruvate to shikimate 3-phosphate in the shikimate pathway. The protein is localized in the plastid. This enzyme is known to be targeted by glyphosate herbicide. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 1,815,176-1,818,805bp | View Comparative Map | |||
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Map Position [ View in Marker DB ] | |||||
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# | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
1 | Rice japonica MSU6 | Chr. 6 | 1815176 bp | 1818805 bp | grjp2009a-6-GR:0060297 |
Plant Structure | shoot axis pith (PO:0005041), stem internode (PO:0020142) |
Cellular Component | plastid (GO:0009536) |
Molecular Function | 3-phosphoshikimate 1-carboxyvinyltransferase activity (GO:0003866) |
Biological Process | aromatic amino acid family biosynthetic process (GO:0009073), chorismate biosynthetic process (GO:0009423), shikimate biosynthetic process (GO:0033587) |
Environment | Magnaporthe grisea (EO:0007226), Xanthomonas oryzae pv. oryzae (EO:0007257), watering regimen (EO:0007383), unknown environment (EO:0007403), 5-methyltryptophan (EO:0007408) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
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chr6 | 1,815,176 | 1,818,805 | ~160K SNPs x 20 accessions (McNally 2... | 10 | Search for SNPs |
chr6 | 1,815,176 | 1,818,805 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr6 | 1,815,176 | 1,818,805 | Huang X, et al, Nat Genetics 2010 Nov... | 8 | Search for SNPs |
chr6 | 1,815,176 | 1,818,805 | RiceDiversity 44K SNP assay, 34 trait... | 8 | Search for SNPs |
chr6 | 1,815,176 | 1,818,805 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |