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Release Notes
Browse Ontology Database by:
Trait
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Plant Structure
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Growth Stage
Find:
In:
Gene Symbol & Name
Gene Accession
Chromosome No.
TO:Trait
PO:Plant Structure
PO:Plant Growth and Development Stage
GRO:Cereal Plant Growth Stage
GO:Cellular Component
GO:Molecular Function
GO:Biological Process
EO:Environment
GenBank Accession
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Type:
Not sequenced
CDS (Protein coding)
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Species:
Aegilops
Aegilops x Triticum
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All Species
With Phenotype
E.g.,
d1
,
dwarf-1
,
GR:0060184
,
flower*
,
*tillering stage*
Or
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Oryza sativa gene "CHL5" (GR:0060122)
Species
Oryza sativa (Rice)
[
GR_tax:013681
]
Accession
GR:0060122
Gene Symbol
CHL5
Gene Name
CHLORINA 5
Synonyms (4)
chl5
chlorina-5
chl5
chlorina-5
E.C. Numbers (0)
Pathway Reactions (0)
Chromosome No.
1
Gene Type
Not sequenced
Has Phenotype
yes
Description
Yellowish green leaves with fewer culms.
Alleles (1)
chl5.1
Germplasm (1)
CM62
Sequences (0)
Gene-To-Gene Interactions (0)
Gene Interactions (0)
Map Positions (1)
Oryza sativa (1)
Map Type
Map Set
Name
Map
Position
Ext. Links
Genetic
Hokkaido Morphological 2000
BNL6.32
1
119-145cM
View Comparative Map
Details
Date Created
Mapping Method:
Comments
CMap Preview
Gene Map Positions (1)
Map Position
[ View in Marker DB ]
#
Map Set Name
Linkage Group
Start Position
Stop Position
CMap Feature Acc
1
Hokkaido Morphological 2000
1
119 cM
145 cM
morph-2000-1-ip3
Associated Ontologies (13)
Trait
leaf lamina color
(TO:0000299)
, tiller number
(TO:0000346)
, chlorophyll content
(TO:0000495)
, carotenoid content
(TO:0000496)
Plant Structure
axillary shoot system
(PO:0006343)
, vascular leaf
(PO:0009025)
Plant Growth and Development Stage
LP.05 five leaves visible stage
(PO:0007065)
, 2 formation of axillary shoot stage
(PO:0007073)
, LP.06 six leaves visible stage
(PO:0007123)
Cereal Plant Growth Stage
03-tillering stage
(GRO:0007049)
Biological Process
biological_process
(GO:0008150)
, chlorophyll biosynthetic process
(GO:0015995)
, carotenoid biosynthetic process
(GO:0016117)
Associated QTL (0)
Database Cross-References (1)
Oryzabase:
420
Literature (7)
Omura-T, Iwata-N, Satoh-H., "Linkage studies in rice (Oryza sativa L.). On some virescent and chlorina mutants",
J Fac Agr Kyushu Univ
, 1978, vol. 23, pp. 85-93
Iwata-N, Satoh-H, Omura-T., "Linkage studies in rice On some genes described newly which belonging to the third linkage group",
Japan J Breed
, 1979, vol. 29(Suppl 1), pp. 234-235
Iwata-N, Satoh-H, Omura-T., "Linkage analysis by use of trisomics in rice (Oryza sativa L) IV Linkage groups locating on chromosomes 2 and 10",
Japan J Breed
, 1981, vol. 31(Suppl 1), pp. 66-67
Iwata-N, Satoh-H, Omura-T., "Studies on the trisomics in rice plants (Oryza sativa L). VII. On some marker genes located on chromosome 2 and their sequence on the linkage map",
J Fac Agr Kyushu Univ
, 1984, vol. 29(2.3), pp. 139-144
Iwata-N, Omura-T., "Studies on the trisomics in rice plants (Oryza sativa L) VI An accomplishment of a trisomic series in japonica rice plants",
Japanese journal of genetics
, 1984, vol. 59(3), pp. 199-204
Iwata-N, Satoh-H, Yoshimura-A., "Linkage studies in rice (Oryza sativa L) Linkage map of chromosome 3",
Bull Inst Trop Agr Kyushu Univ
, 1989, vol. 12, pp. 9-9
Iwata-N., "Exploitation and identification on chloroplast mutants",
Exploitation and Identification of Rice Gene Resources N Iwata, ed (Report of Grant-in-Aid for Scientific Research)
, 1990, pp. 10-19
Images (1)
1.
1. Plants with pale green colored leaves and reduced tillers (on left).
SNPs (0)