Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
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Accession | GR:0020237 | ||||
Gene Symbol | bhlh99 | ||||
Gene Name | basic/helix-loop-helix 99 | ||||
Synonyms (4) |
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E.C. Numbers (0) | |||||
Pathway Reactions (0) | |||||
Chromosome No. | 7 | ||||
Gene Type | CDS (Protein coding) | ||||
Has Phenotype | |||||
Description | Basic/helix-loop-helix (bHLH) transcription factors are known to play a role in the specification of tissue types in animals. The bHLH domain is approximately 60aa in size and consists of a basic region and a helix-loop-helix region. The helix-loop-helix region contains two amphipathic alpha helices. | ||||
Curator Comment | Information based upon bioinformatic analysis of the Basic/Helix-Loop-Helix transcription factor in Rice and Arabidopsis. |
Nucleotide (DNA) |
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 7 | 4,337,515-4,341,220bp | View Comparative Map | |||
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Map Position [ View in Marker DB ] | |||||
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# | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
1 | Rice japonica MSU6 | Chr. 7 | 4337515 bp | 4341220 bp | grjp2009a-7-GR:0020237 |
Cellular Component | nucleus (GO:0005634) |
Molecular Function | transcription regulator activity (GO:0030528) |
Biological Process | GO:0045449 (GO:0045449) |
Environment | Magnaporthe grisea (EO:0007226), unknown environment (EO:0007403) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
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chr7 | 4,337,515 | 4,341,220 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr7 | 4,337,515 | 4,341,220 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr7 | 4,337,515 | 4,341,220 | Huang X, et al, Nat Genetics 2010 Nov... | 3 | Search for SNPs |
chr7 | 4,337,515 | 4,341,220 | RiceDiversity 44K SNP assay, 34 trait... | 3 | Search for SNPs |
chr7 | 4,337,515 | 4,341,220 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |