Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
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Accession | GR:0020044 | ||||||
Gene Symbol | gh3.8 | ||||||
Gene Name | Auxin-responsive GH3.8 | ||||||
Synonyms (6) |
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E.C. Numbers (0) | |||||||
Pathway Reactions (0) | |||||||
Chromosome No. | 7 | ||||||
Gene Type | CDS (Protein coding) | ||||||
Has Phenotype | no | ||||||
Description | Belongs to the class of early auxin responsive genes. | ||||||
Curator Comment | There is no change in the expression of transcript following treatment with auxin. There is a decrease in transcript expression in plants grown in dark conditions in comparison to those grown in the light. The relative mRNA levels of gh3.8 are highest in flower tissue. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 7 | 24,148,655-24,151,085bp | View Comparative Map | |||
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Map Position [ View in Marker DB ] | |||||
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# | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
1 | Rice japonica MSU6 | Chr. 7 | 24148655 bp | 24151085 bp | grjp2009a-7-GR:0020044 |
Plant Growth and Development Stage | leaf production stage (PO:0007133) |
Cereal Plant Growth Stage | 02-seedling (GRO:0007047) |
Biological Process | response to light stimulus (GO:0009416), response to auxin stimulus (GO:0009733) |
Environment | laboratory study (EO:0007255), tissue culture growth media (EO:0007266), unknown environment (EO:0007403) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr7 | 24,148,655 | 24,151,085 | ~160K SNPs x 20 accessions (McNally 2... | 1 | Search for SNPs |
chr7 | 24,148,655 | 24,151,085 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr7 | 24,148,655 | 24,151,085 | Huang X, et al, Nat Genetics 2010 Nov... | 1 | Search for SNPs |
chr7 | 24,148,655 | 24,151,085 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |
chr7 | 24,148,655 | 24,151,085 | RiceDiversity 44K SNP assay, 34 trait... | 0 |