Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
---|---|---|---|---|---|---|---|
Accession | GR:0020005 | ||||||
Gene Symbol | iaa1 | ||||||
Gene Name | indoleacetic acid 1 | ||||||
Synonyms (6) |
|
||||||
E.C. Numbers (0) | |||||||
Pathway Reactions (2) |
|
||||||
Chromosome No. | 1 | ||||||
Gene Type | CDS (Protein coding) | ||||||
Has Phenotype | no | ||||||
Description | Early auxin responsive gene. Aux/IAA genes encode short-lived transcriptional factors that act to repress the expression of early auxin response genes when auxin concentrations are low. | ||||||
Curator Comment | Relative mRNA levels of iaa1 are highest in flowers. mRNA levels increase 3 fold when coleoptile segments of 3-day-old etiolated seedlings are treated with 30 micro mols 2,4-D in comparison to auxin depleted samples. Shares similar expression profiles to iaa15. |
Protein |
|
||||||
---|---|---|---|---|---|---|---|
Nucleotide (DNA) |
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 4,072,676-4,075,438bp | View Comparative Map | |||
|
Map Position [ View in Marker DB ] | |||||
---|---|---|---|---|---|
# | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
1 | Rice japonica MSU6 | Chr. 1 | 4072676 bp | 4075438 bp | grjp2009a-1-GR:0020005 |
Plant Structure | coleoptile (PO:0020033) |
Plant Growth and Development Stage | leaf production stage (PO:0007133) |
Cereal Plant Growth Stage | 02-seedling (GRO:0007047) |
Cellular Component | nucleus (GO:0005634) |
Molecular Function | protein dimerization activity (GO:0046983) |
Biological Process | regulation of translation (GO:0006417), response to auxin stimulus (GO:0009733), GO:0045449 (GO:0045449) |
Environment | laboratory study (EO:0007255), tissue culture growth media (EO:0007266), unknown environment (EO:0007403) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 4,072,676 | 4,075,438 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr1 | 4,072,676 | 4,075,438 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr1 | 4,072,676 | 4,075,438 | Huang X, et al, Nat Genetics 2010 Nov... | 3 | Search for SNPs |
chr1 | 4,072,676 | 4,075,438 | RiceDiversity 44K SNP assay, 34 trait... | 3 | Search for SNPs |
chr1 | 4,072,676 | 4,075,438 | RiceDiversity 44K SNP assay, 34 trait... | 0 |