Accession Name | Guan-Yin-Tsan |
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Institute(s) Holding Accession | |
Accession Number | IRGC51300 |
Synonym(s) | |
Germplasm Type | N/A |
Genus | Oryza |
Species | sativa |
Subspecies | Indica |
Subtaxa | |
Taxonomy Cross-Reference | GR_tax:013682 |
Title | Design | Polymorphism Type | Allele Scoring Protocol | PI(s) | Comments | Data |
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Genetic structure and diversity in Oryza sativa L. | 234 rice accessions from wide geographical regions of the world genotyped at 169 nuclear and 2 chloroplast loci to elucidate diversity within subspecies Oryza sativa indica and japonica | N/A | McCouch-S-R, Tai-T-H | Prediction of population structure was model-based (STRUCTURE) and based on data from 169 genomic SSRs. Reference: Garris et al., 2005. | Show Allele Data | |
Genome-wide patterns of nucleotide polymorphism in domesticated rice | SNP Assay | N/A | Caicedo-A-L | Reference: Caicedo et al., 2007. Pervasive positive selection shapes genome-wide patterns of nucleotide polymorphism in domesticated Asian rice (Oryza sativa). Data for the STS paper was generated based up on TIGRv3 pseudomolecules. The data in this system is based upon version 4. | Show Allele Data | |
Selection under domestication: Evidence for a sweep in the rice Waxy genomic region | SNP assay. Sequence analysis across 500-kb region centered on Waxy | N/A | Olsen-K-M | Reference: Olsen et al.,2006. | Show Allele Data | |
Global dissemination of a single mutation conferring white pericarp in rice | Genotyping of 440 geographically and genetically diverse rice cultivars using the rice indel RID 12 primers | N/A | Sweeney/McCouch | Reference: Sweeney et. al. PLoS Genetics, 2007; Genotyping analysis revealed a single 14-bp deletion in the Rc gene is responsible for white pericarp in 97.9% of rice | Show Allele Data |
Stock Source | Seed Lot ID | Comments |
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IRRI | RA4968 | |
McCouch Lab | RA4968 | new as of Sweeney et. al. PMID:17696613 |
Trait | Value | Experiment |
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pericarp color | white | Global dissemination of a single mutation conferring white pericarp in rice |
Trait Name | Trait Protocol | Trait Values |
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pericarp color | Ten seeds per plant were dehulled and then visually inspected; PATO:0000322, PATO:0000323; ECO:0000002; GAZ:00004426 |
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Gazetteer Ontology | N/A |
Elevation | |
Latitude | NA |
Longitude | NA |
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