There is allele data for locus "RM222" from 3 experiments.
Title | Design | Polymorphism Type | Allele Scoring Protocol | PI(s) | Comments | Data |
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Evaluation of Genetic diversity in Rice Subspecies Using Microsatellite Markers | 38 U.S rice cultivars and 2 wild relatives were genotyped by means of 111 genomic SSR markers | SSR | PCR products were size separated using ABI 377 DNA analyzer; SSR fragements sizes were estimated with GenScan software. Alleles were called manually using PCR products of IR36 as a standard. | Mackill-D-J | Population structure was inferred using genetic-distance method with 111 SSR markers. Reference: Ni et al., 2002. | Show Allele Data |
The Population Structure of African Cultivated Rice Oryza glaberrima (Steud.): Evidence for Elavated Levels of Linkage Disequilibrium Caused by Admixture with O. sativa and Ecological Adaptation | 198 O. glaberrima and 9 O. sativa accessions were evaluated using 93 SSR markers. | SSR | PCR products were size separated using polyacrylamine gel electrophoresis and detected using silver staining or using an ABI fluorescent detection system. Alleles were scored using Genotyper software. | McCouch-S-R | Reference: Semon et al., 2005. | Show Allele Data |
Genetic analysis of Indian aromatic and quality rice (Oryza sativa L.) germplasm using panels of fluorescently-labeled microsatellite markers | 52 basmati and aromatic/quality and 17 indica and japonica rice varieties/accessions were genotyped using 30 SSR markers. | SSR | Fragment sizes were estimated with GENSCAN 672 software by the Local Southern method. Allele calling was done using GENOTYPER software. The population structure displayed is based on UPGMA clustering analysis. | McCouch-S-R | Reference: Jain et al., 2004. | Show Allele Data |