Explore this variant
Genomic context
- Genes and regulation
- Flanking sequence
Genotype frequency
Phenotype data
Sample genotypes
Linkage disequilibrium
Phylogenetic context
Citations
3D Protein model

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Gramene is produced in collaboration with Ensembl Plants

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rs53170792 SNP

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Most severe consequence

stop gained

|See all predicted consequences

Alleles

C/A

Location

Chromosome 1:60236 (forward strand)|VCF:1 60236 rs53170792 C A

HGVS names

This variant has 3 HGVS names - Show

Synonyms

dbSNP ss72842169

External Links

Original source

Variation features from dbSNP (release 129)

About this variant

This variant overlaps 1 transcript.

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Explore this variant

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Graphical neighbourhood region

Consequences (e.g. missense)

Upstream and downstream sequence

Allele and genotype frequencies (Not available)

Diseases and traits (Not available)

Sample genotypes (Not available)

LD plots and tables (Not available)

Sequence conservation via cross-species alignments

Citations (Not available)

Using the website

Video: Browsing SNPs and CNVs in Ensembl
Video: Clip: Genome Variation
Video: BioMart: Variation IDs to HGNC Symbols
Exercise: Genomes and SNPs in Malaria

Analysing your data

Test your own variants with the Variant Effect Predictor

Reference materials

Variation Quick Reference card

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Personal Data