Arabidopsis thaliana (TAIR10) ▼ 
Summary
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phytochrome E [Source:NCBI gene (formerly Entrezgene);Acc:827538]
F15J5.100, F15J5_100, PHYTOCHROME E
Chromosome 4: 10,042,137-10,046,346 reverse strand.
This gene has 1 transcript (splice variant), 85 orthologues and 15 paralogues.
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|
| PHYE-201 | AT4G18130.1 | 3912 | 1112aa | AT4G18130.1 | Protein coding | P42498 | - | Ensembl Canonical, |
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Showing the top 50 hits from Europe PubMed Central
| PubMed ID | Title | Authors | Journal |
|---|---|---|---|
| 38337941 | Unveiling Molecular Signatures in Light-Induced Seed Germination: Insights from PIN3, PIN7, and AUX1 in Arabidopsis thaliana. | Tognacca RS, Ljung K, Botto JF. | Plants (Basel) 13 (3) 2024 |
| 37887291 | Role of Phytochromes in Red Light-Regulated Alternative Splicing in Arabidopsis thaliana: Impactful but Not Indispensable. | Careno DA, Assaf CH, Eggermont EDC, Canelo M, Cerdán PD, Yanovsky MJ. | Cells 12 (20) 2023 |
| 35687579 | Photoreceptors' gene expression of Arabidopsis thaliana grown with biophilic LED-sourced lighting systems. | Beatrice P, Chiatante D, Scippa GS, Montagnoli A. | PLoS One 17 (6) 2022 |
| 36161012 | Functional analysis of PHYB polymorphisms in Arabidopsis thaliana collected in Patagonia. | Ruiz-Diaz MJ, Matsusaka D, Cascales J, Sánchez DH, Sánchez-Lamas M, Cerdán PD, Botto JF. | Front Plant Sci 13 2022 |
| 35720591 | Phytochrome-Dependent Regulation of ZFP6 and ZFPH Impacts Photomorphogenesis in Arabidopsis thaliana. | Cota-Ruiz K, Oh S, Montgomery BL. | Front Plant Sci 13 2022 |
| 34071961 | Beyond the Genetic Pathways, Flowering Regulation Complexity in Arabidopsis thaliana. | Quiroz S, Yustis JC, Chávez-Hernández EC, Martínez T, Sanchez MP, Garay-Arroyo A, Álvarez-Buylla ER, García-Ponce B. | Int J Mol Sci 22 (11) 2021 |
| 33958633 | ATHB2 is a negative regulator of germination in Arabidopsis thaliana seeds. | Tognacca RS, Carabelli M, Morelli G, Ruberti I, Botto JF. | Sci Rep 11 (1) 2021 |
| 38431282 | Light signaling in plants-a selective history. | Huq E, Lin C, Quail PH. | Plant Physiol 195 (1) 2024 |
| 33888582 | ARABIDOPSIS THALIANA HOMEOBOX GENE 1 controls plant architecture by locally restricting environmental responses. | Ejaz M, Bencivenga S, Tavares R, Bush M, Sablowski R. | Proc Natl Acad Sci U S A 118 (17) 2021 |
| 32397956 | Transcriptomic analysis of poco1, a mitochondrial pentatricopeptide repeat protein mutant in Arabidopsis thaliana. | Emami H, Kumar A, Kempken F. | BMC Plant Biol 20 (1) 2020 |
| 31552074 | Alternative Splicing Regulation During Light-Induced Germination of Arabidopsis thaliana Seeds. | Tognacca RS, Servi L, Hernando CE, Saura-Sanchez M, Yanovsky MJ, Petrillo E, Botto JF. | Front Plant Sci 10 2019 |
| PMC10706466 | Effect of Red Light on the Expression of the Phytochrome Gene Family and the Accumulation of Glycoside Alkaloids in Potatoes | Zhang X, Jiang H, Liu W, Wang Y, Zeng F. | Foods 12 (23) 2023 |
| 38545394 | Phytochrome phosphorylation in plant light signaling. | Han YJ, Kim SH, Kim JI. | Front Plant Sci 15 2024 |
| 31420516 | Large-effect flowering time mutations reveal conditionally adaptive paths through fitness landscapes in Arabidopsis thaliana. | Taylor MA, Wilczek AM, Roe JL, Welch SM, Runcie DE, Cooper MD, Schmitt J. | Proc Natl Acad Sci U S A 116 (36) 2019 |
| 31325959 | Uncovering the molecular signature underlying the light intensity-dependent root development in Arabidopsis thaliana. | Kumari S, Yadav S, Patra D, Singh S, Sarkar AK, Panigrahi KCS. | BMC Genomics 20 (1) 2019 |
| 38755402 | Circadian and photoperiodic regulation of the vegetative to reproductive transition in plants. | Wang F, Han T, Jeffrey Chen Z. | Commun Biol 7 (1) 2024 |
| 38698332 | Comparative transcriptomics analysis reveals defense mechanisms of Manihot esculenta Crantz against Sri Lanka Cassava MosaicVirus. | Chaowongdee S, Vannatim N, Malichan S, Kuncharoen N, Tongyoo P, Siriwan W. | BMC Genomics 25 (1) 2024 |
| 38344182 | Functional dissection of phytochrome A in plants. | Lei Y, Ma Q, Zhang Y, Li J, Ning X, Wang Y, Ge X, Zhao H, Lin H. | Front Plant Sci 15 2024 |
| 37514360 | The Role of Light Quality in Regulating Early Seedling Development. | Wei Y, Wang S, Yu D. | Plants (Basel) 12 (14) 2023 |
| 38254983 | GIGANTEA Unveiled: Exploring Its Diverse Roles and Mechanisms. | Liu L, Xie Y, Yahaya BS, Wu F. | Genes (Basel) 15 (1) 2024 |
| 37810087 | Photobiotechnology for abiotic stress resilient crops: Recent advances and prospects. | Gururani MA. | Heliyon 9 (9) 2023 |
| 37940838 | Genome-wide identification and molecular expression profile analysis of FHY3/FAR1 gene family in walnut (Juglans sigillata L.) development. | Chen S, Chen Y, Liang M, Qu S, Shen L, Zeng Y, Hou N. | BMC Genomics 24 (1) 2023 |
| 36640683 | Light induction of somatic embryogenesis in Arabidopsis is regulated by PHYTOCHROME E. | Chan A, Stasolla C. | Plant Physiol Biochem 195 2023 |
| 38247523 | Application of Multi-Omics Technologies to the Study of Phytochromes in Plants. | Wu S, Gao Y, Zhang Q, Liu F, Hu W. | Antioxidants (Basel) 13 (1) 2024 |
| 38308663 | Homoeologous exchanges contribute to branch angle variations in rapeseed: Insights from transcriptome, QTL-seq and gene functional analysis. | Sun C, Wu J, Zhou X, Fu S, Liu H, Xue Z, Wang X, Peng Q, Gao J, Chen F, Zhang W, Hu M, Fu T, Wang Y, Yi B, Zhang J. | Plant Biotechnol J 22 (6) 2024 |
| 38143485 | The red/far-red light photoreceptor FvePhyB regulates tissue elongation and anthocyanin accumulation in woodland strawberry. | Gao Q, Hu S, Wang X, Han F, Luo H, Liu Z, Kang C. | Hortic Res 10 (12) 2023 |
| 38275750 | Phytochrome-Interacting Proteins. | Kaeser G, Krauß N, Roughan C, Sauthof L, Scheerer P, Lamparter T. | Biomolecules 14 (1) 2023 |
| 37510382 | Genome-Wide Identification and Characterization of the Phytochrome Gene Family in Peanut. | Shen Y, Liu Y, Liang M, Zhang X, Chen Z, Shen Y. | Genes (Basel) 14 (7) 2023 |
| 36670526 | Phytochrome F mediates red light responsiveness additively with phytochromes B1 and B2 in tomato. | Balderrama D, Barnwell S, Carlson KD, Salido E, Guevara R, Nguyen C, Madlung A. | Plant Physiol 191 (4) 2023 |
| 37686008 | Functions of Plant Phytochrome Signaling Pathways in Adaptation to Diverse Stresses. | Qiu X, Sun G, Liu F, Hu W. | Int J Mol Sci 24 (17) 2023 |
| 38396875 | Functions of Phytochrome Interacting Factors (PIFs) in Adapting Plants to Biotic and Abiotic Stresses. | Li ZY, Ma N, Zhang FJ, Li LZ, Li HJ, Wang XF, Zhang Z, You CX. | Int J Mol Sci 25 (4) 2024 |
| PPR810692 | Photoreceptor–induced sinapate synthesis contributes to photoprotection in Arabidopsis | Leonardelli M, Tissot N, Podolec R, Ares-Orpel F, Glauser G, Ulm R, Demarsy E. | preprint (2024) |
| 38475461 | Genome-Wide Association Studies Prioritize Genes Controlling Seed Size and Reproductive Period Length in Soybean. | Wang L, Niu F, Wang J, Zhang H, Zhang D, Hu Z. | Plants (Basel) 13 (5) 2024 |
| 29117199 | Variation in shade-induced flowering in Arabidopsis thaliana results from FLOWERING LOCUS T allelic variation. | Schwartz CJ, Lee J, Amasino R. | PLoS One 12 (11) 2017 |
| 38000896 | Improved super-resolution ribosome profiling reveals prevalent translation of upstream ORFs and small ORFs in Arabidopsis. | Wu HL, Ai Q, Teixeira RT, Nguyen PHT, Song G, Montes C, Elmore JM, Walley JW, Hsu PY. | Plant Cell 36 (3) 2024 |
| 37853112 | Light regulation of the biosynthesis of phenolics, terpenoids, and alkaloids in plants. | Liu Y, Singh SK, Pattanaik S, Wang H, Yuan L. | Commun Biol 6 (1) 2023 |
| 38044963 | Photosynthetically active radiation is required for seedling growth promotion by volcanic dacitic tuff breccia (Azomite). | McCue KF, Mehlferber E, Reed R, Ortiz A, Ferrel J, Khanna R. | Plant Direct 7 (12) 2023 |
| 31274995 | Density effects on semi-dwarf and early flowering mutants of Arabidopsis thaliana under continuous light. | Takahashi K, Hara M, Miyata K, Hayama R, Mizoguchi T. | Plant Biotechnol (Tokyo) 33 (4) 2016 |
| 36982350 | The Role of Light-Regulated Auxin Signaling in Root Development. | Yun F, Liu H, Deng Y, Hou X, Liao W. | Int J Mol Sci 24 (6) 2023 |
| 36768431 | Regulation of Plant Photoresponses by Protein Kinase Activity of Phytochrome A. | Choi DM, Kim SH, Han YJ, Kim JI. | Int J Mol Sci 24 (3) 2023 |
| 36882415 | The Arabidopsis endosperm is a temperature-sensing tissue that implements seed thermoinhibition through phyB. | Piskurewicz U, Sentandreu M, Iwasaki M, Glauser G, Lopez-Molina L. | Nat Commun 14 (1) 2023 |
| 36973259 | Phytochrome B photobodies are comprised of phytochrome B and its primary and secondary interacting proteins. | Kim C, Kwon Y, Jeong J, Kang M, Lee GS, Moon JH, Lee HJ, Park YI, Choi G. | Nat Commun 14 (1) 2023 |
| 38233837 | IGT/LAZY genes are differentially influenced by light and required for light-induced change to organ angle. | Waite JM, Dardick C. | BMC Biol 22 (1) 2024 |
| 37333861 | Machine learning classification of plant genotypes grown under different light conditions through the integration of multi-scale time-series data. | Sakeef N, Scandola S, Kennedy C, Lummer C, Chang J, Uhrig RG, Lin G. | Comput Struct Biotechnol J 21 2023 |
| 36340409 | Bifunctional regulators of photoperiodic flowering in short day plant rice. | Sun C, He C, Zhong C, Liu S, Liu H, Luo X, Li J, Zhang Y, Guo Y, Yang B, Wang P, Deng X. | Front Plant Sci 13 2022 |
| 38046851 | Red light induces salicylic acid accumulation by activating CaHY5 to enhance pepper resistance against Phytophthora capsici. | Yang Y, Li Y, Guang Y, Lin J, Zhou Y, Yu T, Ding F, Wang Y, Chen J, Zhou Y, Dang F. | Hortic Res 10 (11) 2023 |
| 26337193 | Involvement of cotton gene GhFPF1 in the regulation of shade avoidance responses in Arabidopsis thaliana. | Wang X, Pang C, Wei H, Yu S. | Plant Signal Behav 10 (9) 2015 |
| 35955637 | Underlying Biochemical and Molecular Mechanisms for Seed Germination. | Farooq MA, Ma W, Shen S, Gu A. | Int J Mol Sci 23 (15) 2022 |
| 37108516 | Chromosomal-Scale Genome Assemblies of Two Coastal Plant Species, Scaevola taccada and S. hainanensis-Insight into Adaptation Outside of the Common Range. | Li S, Mao X, He Z, Xu S, Guo Z, Shi S. | Int J Mol Sci 24 (8) 2023 |
| 26030677 | Synergistic and Antagonistic Action of Phytochrome (Phy) A and PhyB during Seedling De-Etiolation in Arabidopsis thaliana. | Su L, Hou P, Song M, Zheng X, Guo L, Xiao Y, Yan L, Li W, Yang J. | Int J Mol Sci 16 (6) 2015 |
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