Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Plant Compara
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
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Genetic Variation
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Gramene is produced in collaboration with Ensembl Plants

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Gene: scpl31 AT1G11080

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Description

serine carboxypeptidase-like 31 [Source:NCBI gene (formerly Entrezgene);Acc:837649]

Gene Synonyms

serine carboxypeptidase-like 31, T19D16.4, T19D16_4

Location

Chromosome 1: 3,694,328-3,698,013 reverse strand.

About this gene

This gene has 2 transcripts (splice variants), 100 orthologues and 53 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
scpl31-202	AT1G11080.2	1674	495aa	AT1G11080.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F4I7C9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
scpl31-201	AT1G11080.1	2322	492aa	AT1G11080.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178WDL2 O04084	-	-

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Literature

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Showing the top 11 hits from Europe PubMed Central

PubMed ID	Title	Authors	Journal
37554559	Black sheep, dark horses, and colorful dogs: a review on the current state of the Gene Ontology with respect to iron homeostasis in Arabidopsis thaliana.	Mai HJ, Baby D, Bauer P.	Front Plant Sci 14 2023
36063057	PHYTOCHROME-INTERACTING FACTOR 4/HEMERA-mediated thermosensory growth requires the Mediator subunit MED14.	Bajracharya A, Xi J, Grace KF, Bayer EE, Grant CA, Clutton CH, Baerson SR, Agarwal AK, Qiu Y.	Plant Physiol 190 (4) 2022
38790621	Comparative Physio-Biochemical and Transcriptome Analyses Reveal Contrasting Responses to Magnesium Imbalances in Leaves of Mulberry (Morus alba L.) Plants.	Shi Y, Jin X, Ackah M, Amoako FK, Li J, Tsigbey VE, Li H, Cui Z, Sun L, Zhao C, Zhao W.	Antioxidants (Basel) 13 (5) 2024
27716045	Iron homeostasis in Arabidopsis thaliana: transcriptomic analyses reveal novel FIT-regulated genes, iron deficiency marker genes and functional gene networks.	Mai HJ, Pateyron S, Bauer P.	BMC Plant Biol 16 (1) 2016
22645580	Overexpression of Fatty Acid Amide Hydrolase Induces Early Flowering in Arabidopsis thaliana.	Teaster ND, Keereetaweep J, Kilaru A, Wang YS, Tang Y, Tran CN, Ayre BG, Chapman KD, Blancaflor EB.	Front Plant Sci 3 2012
36466234	Altering the balance between AOX1A and NDB2 expression affects a common set of transcripts in Arabidopsis.	Sweetman C, Waterman CD, Wong DCJ, Day DA, Jenkins CLD, Soole KL.	Front Plant Sci 13 2022
32275733	Genomics, molecular and evolutionary perspective of NAC transcription factors.	Mohanta TK, Yadav D, Khan A, Hashem A, Tabassum B, Khan AL, Abd Allah EF, Al-Harrasi A.	PLoS One 15 (4) 2020
28883478	Dissection of iron signaling and iron accumulation by overexpression of subgroup Ib bHLH039 protein.	Naranjo-Arcos MA, Maurer F, Meiser J, Pateyron S, Fink-Straube C, Bauer P.	Sci Rep 7 (1) 2017
16895613	Cross genome comparisons of serine proteases in Arabidopsis and rice.	Tripathi LP, Sowdhamini R.	BMC Genomics 7 2006
18613973	Altered gene expression changes in Arabidopsis leaf tissues and protoplasts in response to Plum pox virus infection.	Babu M, Griffiths JS, Huang TS, Wang A.	BMC Genomics 9 2008
15489341	Versatile gene-specific sequence tags for Arabidopsis functional genomics: transcript profiling and reverse genetics applications.	Hilson P, Allemeersch J, Altmann T, Aubourg S, Avon A, Beynon J, Bhalerao RP, Bitton F, Caboche M, Cannoot B, Chardakov V, Cognet-Holliger C, Colot V, Crowe M, Darimont C, Durinck S, Eickhoff H, de Longevialle AF, Farmer EE, Grant M, Kuiper MT, Lehrach H, Léon C, Leyva A, Lundeberg J, Lurin C, Moreau Y, Nietfeld W, Paz-Ares J, Reymond P, Rouzé P, Sandberg G, Segura MD, Serizet C, Tabrett A, Taconnat L, Thareau V, Van Hummelen P, Vercruysse S, Vuylsteke M, Weingartner M, Weisbeek PJ, Wirta V, Wittink FR, Zabeau M, Small I.	Genome Res 14 (10b) 2004

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