Explore this variant
Genomic context
- Genes and regulation
- Flanking sequence
Genotype frequency
Phenotype data
Sample genotypes
Linkage disequilibrium
Phylogenetic context
Citations
3D Protein model

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Gramene is produced in collaboration with Ensembl Plants

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rs53073744 SNP

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Most severe consequence

intron variant

|See all predicted consequences

Alleles

C/T

Location

Chromosome 1:4503506 (forward strand)|VCF:1 4503506 rs53073744 C T

HGVS names

This variant has 3 HGVS names - Show

External Links

Original source

The European Variation Archive (EVA) is an open-access database of all types of genetic variation data from all species

About this variant

This variant overlaps 2 transcripts and has 1 sample genotype.

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Explore this variant

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Graphical neighbourhood region

Consequences (e.g. missense)

Upstream and downstream sequence

Allele and genotype frequencies

Diseases and traits (Not available)

Sample genotypes

LD plots and tables (Not available)

Sequence conservation via cross-species alignments

Citations (Not available)

Using the website

Video: Browsing SNPs and CNVs in Ensembl
Video: Clip: Genome Variation
Video: BioMart: Variation IDs to HGNC Symbols
Exercise: Genomes and SNPs in Malaria

Analysing your data

Test your own variants with the Variant Effect Predictor

Reference materials

Variation Quick Reference card

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Personal Data