Submitted by admin on Mon, 06/28/2010 - 15:01
Submitted by admin on Mon, 06/28/2010 - 13:41
Gramene users may be interested in the 5th International Rosaceae Genomics Conference in Cape Town, South Africa, November 14-17, 2010. For full conference details, see the RCG5 website.
Submitted by admin on Wed, 06/23/2010 - 09:48
US residents and researchers may apply for travel awards to attend a Gene Annotation Workshop to be held at the ASPB's Plant Biology 2010 meeting (July 31 - August 4, 2010, Montreal, Canada). If selected, the travel award will cover the cost of the Plant Biology 2010 meeting registration cost. We expect to award 10-20 participants for the "Plant Ontology and Gramene's Gene Annotation Workshop" to be held on Saturday, July 31, 2010 from 8:00 AM to 12:00 PM.
Submitted by admin on Tue, 06/08/2010 - 22:28
Submitted by admin on Tue, 06/01/2010 - 09:57
Genome sequencing continues to become less expensive and faster which is great news for researchers; however, manipulating and storing vast amounts of sequence data has become a challenge. Version 4.0 of the Genomic Diversity and Phenotype Data Model (GDPDM) database schema has a solution. Instead of storing individual SNP values, the 4.x version stores long haplotypes as Binary Large OBjects (BLOBs). Each SNP value only requires four bits of memory. Additionally, BLOBs are used to store physical positions and indel lengths. Version 4.1 added another BLOB to store SNP id values.
Submitted by admin on Tue, 05/25/2010 - 10:48
A while ago, Gramene instantiated a Distributed Annotation System (DAS) for serving some of our rice genome annotations directly from our markers and sequences database. We soon found that the size and design of our database was not optimized for type of real-time queries necessary to serve DAS.
Submitted by admin on Tue, 05/18/2010 - 13:29
We are pleased to announce the 31st release of the Gramene database which includes updates to our genomes, diversity, maps, pathways, and web services. Our genome browser has been updated to Ensembl version 57 and hosts fourteen genomes with new annotations, Fgenesh gene predictions, gene trees, whole genome alignments, and synteny views. The genetic diversity databases for rice, Arabidopsis, and maize have new data sets; there are helpful links to start external tools such as TASSEL and Flapjack from our website; and our SNP query tool now shows gene loci overlapping SNP positions.
Submitted by admin on Mon, 05/17/2010 - 13:22
Co-PI Pankaj Jaiswal and Gramene were profiled in the latest edition of Oregon State University's Terra magazine.
Submitted by admin on Mon, 04/26/2010 - 16:11
Gramene would like our users to be aware of the scholarship program with OpenHelix for under-represented groups in science. For more information, please see the press release.
Submitted by admin on Tue, 04/06/2010 - 16:57
The International Peach Genome Initiative (IPGA) has released version 1.0 of the peach genome sequence.
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