Submitted by marcela.karey on Wed, 03/11/2015 - 15:24
Gramene Webinar on Visualization and Analysis of Gene Family Trees
Tuesday, March 17, 2015 @ 2:00 PM EST
Learn the benefits of using Gramene to accelerate your research goals. Our comparative genomics platform of 39 plant species enables you to:
List orthologs and paralogs, and view these relationships within phylogenetic trees, whole genome alignments, and synteny maps.
Explore and visualize functional annotations, expression, and variation in your favorite genes.
Submitted by pankaj.jaiswal on Wed, 02/25/2015 - 19:10
There is an immediate opening for a software and database developer to work on the NSF funded Planteome project (www.planteome.org). This open-source computational biology, comparative genomics, and bioinformatics project involves the development and maintenance of databases, software and automated data analysis pipelines. The incumbent will have a proven track record of database development in MySQL (with exposure to Solr, noSQL, and/or MongoDB) and experience developing software in Python, Perl, PHP, and Java.
Submitted by marcela.karey on Tue, 02/24/2015 - 14:10
Gramene Webinar February 2015
Tuesday, February 24, 2015 @ 2:00 - 2:30 PM EST
Learn the benefits of using Gramene to accelerate your research goals. Our comparative genomics platform of 40 plant species enables you to:
Explore and visualize functional annotations, expression, and variation in your favorite genes.
List orthologs and paralogs, and view these relationships within phylogenetic trees, whole genome alignments, and synteny maps.
Submitted by Sushma_Naithani on Mon, 02/16/2015 - 12:32
Plant Reactome is a resource for plant metabolic and regulatory pathways built using the Reactome model. At present, Plant Reactome has curated metabolic and regulatory pathways from rice and Arabidopsis, and the orthology-based projections of pathways for additional 33 plant species including several Oryza species, and maize. We are developing tools that can support analysis and visualization of user-defined expression data.
Submitted by marcela.karey on Fri, 01/30/2015 - 16:47
Contributions from Sushma Naithani, Kapeel Chougule and Yinping Jiao.
During the Gramene workshop at PAG 2015, participants were introduced to various resources and tools available at the Gramene database. Powerpoint slides used during these presentations are available in Gramene's Outreach FTP.
Image:
Dr. Joshua Stein demonstrating the Ensembl Gramene Genome Browser
Submitted by marcela.karey on Thu, 01/22/2015 - 14:42
The Plant Reactome webinar has been rescheduled for next Tuesday, February 3rd, 2015 @ 2:00 - 2:30 pm EST
Submitted by marcela.karey on Tue, 01/20/2015 - 16:43
The Gramene Team is pleased to announce its release #44. In collaboration with Ensembl Plants we are providing in this release:
Submitted by marcela.karey on Wed, 01/07/2015 - 17:05
We are pleased to announce another exciting Gramene workshop at the annual Plant and Animal Genomes (PAG) Conference!
Learn the latest updates to Gramene’s comparative genomics and pathways visualization/mining tools to aid your research of plant models and crops.
This workshop will give a broad overview of Gramene’s database resources and demonstrate many specific topics like how to:
Submitted by marcela.karey on Tue, 12/16/2014 - 12:01
The Gramene Team is pleased to announce its release #43. In collaboration with Ensembl Plants we are providing in this release:
Submitted by marcela.karey on Mon, 12/15/2014 - 17:06
Gramene will be holding a series of webinars to support the community of Plant researchers, and breeder in utilizing various comparative genomics resources and tools available at Gramene database. These webinars will provide opportunities for direct interactions between database users and Gramene scientists and developers. Participants are welcome to suggest a specific topic for upcoming webinars. Each webinar will cover practical examples to address specific topics of general interest, such as:
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