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Sequence and assembly

Contigs

Genes and transcripts

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Genes (Genes (Ensembl))

This track comprises multiple analyses; Mitochondrial gene models imported from Genbank.; Chloroplast protein-coding genes imported from Genbank.; Genes by The Rice Annotation Project (RAP) dated 2022-09-01.
Rfam RNA Genes (Genes)

RNA genes produced by filtering alignments of Rfam (release 12.2) covariance models.
ncRNA Genes (Genes)

ncRNA genes annotated in ENA
tRNA Genes (Genes)

RNA genes produced by filtering predictions from tRNAscan-SE v1.23.
IRGSP Gene Prediction (IRGSP gene prediction)

Gene prediction by The Rice Annotation Project (RAP) dated 2017-08-04. Read more...
IRGSP nonCoding Genes (IRGSP nonCoding Gene Prediction)

NonCoding gene prediction by The Rice Annotation Project (RAP) dated 2017-08-04. Read more...
MSU Genes (MSU gene)

Gene annotation by MSU Rice Genome Annotation Project dated 2011-10-31. These genes are included alongside the IRGSP annotations, but are not included in Compara or BioMart. Read more...;

Synteny

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