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18. Variation of glutelin seed storage protein in Bangladesh rice cultivars
  M.S. JAHAN1, T. KUMAMARU1, H. Satoh1 and A. Hamid2

1)Laboratory of Plant Genetic Resources, Institute of Genetic Resources, Faculty of Agriculture, Kyushu University, Fukuoka, 812-8581 Japan
2)Department of Agronomy, Bangabandhu Sheikh Mujibur Rahman Agricultural University, Gazipur-1703, Bangladesh

Glutelin, a major storage protein in rice, is synthesized as 57kD proglutelin on the rER, transported to the vacuole via the Golgi apparatus, and formed by proteolysis of the proglutelin through post-translational cleavage into acidic (alpha) and basic (beta) subunits in the vacuole (Yamagata et al. 1982, Takaiwa et al. 1986, Masumura et al. 1989). Uemura et al. (1996) reported that sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE) and isoelectric focusing (IEF) gel electrophoresis are useful to detect the variation of glutelin seed storage protein. Kagawa et al. (1988) found the variation in glutelins of local rice cultivars by SDS-PAGE analysis. Satoh et al. (1990) reported that a large variation exists in glutelin polypeptides in rice collected in Tanzania. This report deals with the variation of glutelin polypeptides in rice cultivars of Bangladesh, an area considered to be one of the centers of origin of cultivated rice (Chatterjee 1951).

Five hundred and seventy six Bangladesh rice cultivars preserved at the Laboratory of Plant Genetic Resources, Kyushu University, Japan, were used in this study. Extracted proteins were separated by SDS-PAGE using the discontinuous buffer system of Laemmli (1970) on a slab gel containing a linear of 15% to 25% acrylamide, 0.05 to 0.67% BIS concentration gradient. Rice glutelin was composed of alpha and beta subunits, which were separated into alpha-1 (39 kD), alpha-2 (38 kD), alpha-3 (37.5 and 37 kD)and alpha-4 (34 and 33 kD) for alpha subunit and beta-1 (23 kD), beta-2 (22.5 kD) and beta-3 (22 kD) bands for beta subunit, respectively. Uemura et al. (1996) reported that the alpha-3 band of Japanese rice cultivar Kinmaze is smaller in molecular size than that of rice cultivar IR36 developed at IRRI, while the alpha-4 (34 kD) band of Kinmaze is larger than that of IR36 (33 kD). Bangladesh rice cultivars varied significantly in SDS-PAGE profiles of glutelin storage protein. In addition to 'Kinmaze' (type 1) and 'IR36' (type 5) types, mutant types with decreased alpha-2 band and with two alpha-3 bands were observed (Fig. 1). One mutant


was characterized by decreased intensity of alpha-2 band, as alpha-2 deficient mutants induced by N-methyl-N-nitrosourea (MNU) treatments (Satoh et al. 1997). The other mutant possessed two alpha-3 bands with different molecular mass (type 2). The decreased intensity of alpha-2 band was accompanied by an increased intensity of alpha-1 band, suggesting that the total glutelin content remained unchanged. On the other hand, the cultivars having decreased intensity of alpha-2 bands (types 3 and 4)differed in SDS-PAGE pattern of alpha-3 band, indicating that alpha-2 and alpha-3 bands were controlled by different genes. This is the first report on spontaneous glutelin mutants detected by SDS-PAGE from Bangladesh rice cultivars, suggesting that rice genetic resources of Bangladesh provide a rich source of genetic diversity.

In Bangladesh, rice is grown in three seasons: aus in summer, aman in autumn and boro in winter. Table 1 shows the ecotypic distribution for glutelin variation. In all of the ecotypes, type 5 was most frequent, indicating that selection preference was higher for this type. Types 2, 3, and 4 were confined to T. Aman ecotype, even if their collection places were different.

SDS-PAGE separates proteins based on molecular masses, while IEF separates them depending on electric charges. SDS-PAGE analysis does not elucidate the genetic traits of the polypeptides because each of the SDS-PAGE bands consists of several polypeptides by IEF (Wen and Luthe 1985). After extraction by 1% lactic acid, the glutelins of 74 cultivars were analyzed by the horizontal slab gel IEF system. The results are shown in Fig. 2. At least 13 types were detected among the cultivars studied for IEF. Types 1 and 5 of SDS-PAGE were separated to types 4 to 10 and types 14 to 16 of IEF respectively, suggesting that both SDS-PAGE and IEF analyses were important for detecting glutelin variation in rice. The alpha-2 band deficient mutants lacked in pI 6.80 band (types 12 and 13, Fig. 2) for IEF, while all the cultivars having alpha-2 band, such as IR36, possessed pI 6.80 band, suggesting that pI 6.80 band was the major polypeptide component of alpha-2 subunit. Similarly, increased intensity of pI 6.59 band and the presence of pI 6.30 band in types 12 and 13 in common suggested that they were the polypeptide components of alpha-1 subunit. These results suggest that the mutated subunits were controlled by structural genes. Meanwhile, IEF profile of cultivars having two alpha-3 bands showed increased intensity of pI 7.52 band and reduced intensity of pI 7.19 band, a pattern similar to IR24 by IEF (type 11, Fig. 2).

Rice seed stores most of the proteins as dilute acid/alkali soluble glutelin (about 75 %of total protein)which is superior in quality due to its easy digestibility and the presence of high amount of first limited amino acid, lysine (Huebner et al. 1990). The glutelin variation observed




in Bangladesh rice cultivars may serve as useful materials to improve rice grain quality.

References

Chatterjee, D., 1951. Note on the origin and distribution of wild and cultivated rices. Indian J. Genet. 11: 18-22.

Huebner, F.R., J.A. Bietz, B.D. Webb and B.O. Juliano, 1990. Rice cultivar identification by high-performance liquid chromatography of endosperm proteins. Cereal Chem. 67: 129-135.

Kagawa, H., H. Hirano and F. Kikuchi, 1988. Variation of glutelin seed storage protein in rice (Oryza sativa L.). Japan J. Breed. 38: 327-332.

Laemmli, U.K., 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227: 680-685.

Masumura, T., K. Kidzu, Y. Sugiyama, N. Mitsukawa, T. Hibino, K. Tanaka and S. Fuji, 1989. Nucleotide sequence of cDNA encoding major rice glutelin. Plant Mol. Biol. 12: 723-725.

Satoh, H., H.M. Ching'ang'a, D. Ilaila and T.C. Katayama, 1990. SDS-PAGE analysis of storage proteins of cultivated rice collected in Tanzania, 1988. Kagoshima Uni. Res. Center S. Paci., Occ. Papers. 18: 114-126.

Satoh, H., L.Q. Qu, T. Kumamaru and M. Ogawa, 1997. Glutelin mutants induced by MNU treatment in rice. RGN 14: 81-84.

Takaiwa, F., S. Kikuchi and K. Oono, 1986. The structure of rice storage protein glutelin precursor deduced from cDNA. FEBS Lett. 206: 33-35.

Uemura, Y.J., H. Satoh, M. Ogawa, H. Suehisa, T.C. Katayama and A. Yoshimura, 1996. Chromosomal location of genes encoding glutelin polypeptides in rice. Rice Genetics III: 471-476.

Wen, T.N. and D.S. Luthe, 1985. Biochemical characterization of rice glutelin. Plant Physiol. 78: 172-177.

Yamagata, H., T. Sugimoto, K. Tanaka and Z. Kasai, 1982. Biosynthesis of storage proteins in developing rice seeds. Plant Physiol. 70: 1094-1100.


  

Last modified: Thu Oct 31 00:11:51 2002